Dehalococcoides mccartyi CG5: X794_05940
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Entry
X794_05940 CDS
T03649
Name
(GenBank) DNA-directed DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dmz
Dehalococcoides mccartyi CG5
Pathway
dmz03030
DNA replication
dmz03410
Base excision repair
dmz03420
Nucleotide excision repair
dmz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X794_05940
03410 Base excision repair
X794_05940
03420 Nucleotide excision repair
X794_05940
03440 Homologous recombination
X794_05940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmz03032
]
X794_05940
03400 DNA repair and recombination proteins [BR:
dmz03400
]
X794_05940
Enzymes [BR:
dmz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
X794_05940
DNA replication proteins [BR:
dmz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X794_05940
DNA repair and recombination proteins [BR:
dmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
X794_05940
NER (nucleotide excision repair)
GGR (global genome repair) factors
X794_05940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH
RecR_HhH
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AII61345
LinkDB
All DBs
Position
complement(1080603..1083314)
Genome browser
AA seq
903 aa
AA seq
DB search
MSKPVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDCYAISF
DKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLA
TRAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAAVRAKYGLGPEHV
ADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEV
ARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGGENPGGGMT
DMFNTPQKVETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAISPAEG
EAYFISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYLMNLLASAGQEIQGL
DFDTMLSAHLLGEKNLGIKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVAD
YTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIF
KLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM
GREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNIL
PSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRVAIYFAEI
KHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE
KLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWG
DME
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacctgtaattgtcctttttgacggcacaaatctggttcatcgggcatatcat
gtactgccacctcttacagtccgcaaaacaggtgaagtggtgggggcggcctttggtttt
gcctctatacttataaaagtcttaaccgacctgaaaccggattgttacgctatatccttt
gataaaaaaggccctaccttcaggcatgagatgttcaaggactacaaagcccaacgtccg
cccatgcctgacgagcttgtcagccagctgggacgggtacgccagattgtggatgctttc
aatatgcctgtatacgaacagagcggttttgaggcagatgatgtgctgggcacactggct
accagagccgccgccgaaggcatggaggttataatagcctccggagacgcagactccatg
cagttggtcagtccggatattcgtattctgtatcccggcccggccggttctttttccaat
accagtctgtatgacgaggcggcagtaagggcaaagtacggtttagggccggagcatgtc
gcagattacaaagcccttatgggtgatccgtctgacaacatacccggagtacccggcata
ggcccgaaaactgcccagaaacttatagaagaatacggcggcatagaagatatatataaa
aatctggataaaataagcccgcccggtctccaaaagaaactggcagacaacgccgaagta
gcccgccagagtaaaatattaactacgattgtgtgtgatctgccgctggatttcagtatt
caggaatgtagatcggaacactataaccgccaaaaggtggtagacctttttcgtgaactg
gagtttttcaggctgattaaccgcctgccaggcggtgaaaatcctggcggcggtatgaca
gatatgtttaacaccccccaaaaggttgaaacccgctatattgtagccaacgggcagaat
ctagacagcatcgtgaagcggttcacggaaaccaaagagctggcactggcagtttcgggc
acttccgaagaagctatagatgcccgcctgactgcgctggcaatttcaccggcagagggc
gaagcctattttatttctgcagaatttatcggtagtgcttcggatgggcagatgtttgtt
tccgaaggtcacccgggtttgattgccctgcttacgaataaaaatataaccaagaccgct
cataatgccaagtacctcatgaatctgctggcttcagccgggcaggaaatacagggactg
gactttgataccatgctttctgcccacctgctgggtgaaaaaaatctgggtataaaagac
ttggtatttgaacacttcggggtggaaattgctgatgttgaaaacatacttactcagaac
ggcaagaaaaagagcttcagtgcatcagagctttcagaagccgcccagttggtggctgat
tacaccttccgcctcaagggtctgtttgccgcccagcttgccgaaaccaagctgatagat
ttgtttgtcaatgttgaaatgcctttggtacctatattactgggtatggagcgtagcggt
attatgctggataccgatttgctcaaaggtatggccgaaaaggtgggcgggcagatattt
aaactggaagaagccatatatgcccaagcgggacacagcttcaacataggttctccccag
cagctggggcggatactttttgacgaactgaaactgccggttatcaaaaaaaccaagacc
ggttattccaccggggcagaggtactggatgaactgaagggtgaacaccggattgtagac
ctgatacttgaatatcgtatgctggtcaaactgaaatctacctatctggatactctgccg
cgtatggtgaatccgcatacccgtcgcctgcataccagtttcaaccagaccagaacggct
accggcagattgtcttccagtgaaccgaatctgcaaaatatacccgtcaggggtgaaatg
ggcagagaaatacggcgggcatttattgccccgaagggtaccgtaatgctggctggagat
tactcccagatagacctgcgggtgctggcccatctttccggagaccctgccctgatagag
gcttttcttaaggaccaggatatccacactgctaccgctgccagattgctgaatatactc
ccgtctgaagtgacaaaggaacaacgccgtctggctaaaacggtgaatttcggagtgata
tatggcatgagcagctacgggttggaacaggctaccgagctttcactggcagaggccgac
aaatttatcaaggcatattttgaaaaatacccgcgggtagctatttactttgcggagatt
aagcatcaggctcggactaacgggtacgttgagaccctgctgggaagacgccggtatata
cctgaaatcaattcgcccaaccggattttgcgtgaatcggccgaacgtatggccataaat
atgcctgttcagggtacgtctgcggatattatcaagctggctatggtcaggctggatgaa
aaactgaaagaagaaaagctggaaagccgcctgctacttcaggtgcatgacgagcttata
tttgaagtgcctgacgcagagcttaagcgtatgagtgctttgcttatggaaactatgtca
ggtgcagtcacctttgaaataccgcttaaggttgagcttaagtccggagcaaactgggga
gatatggagtaa
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