Dromaius novaehollandiae (emu): 112984098 Help Entry 112984098         CDS       T07572                                  Symbol XRN1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism dne  Dromaius novaehollandiae (emu) Pathway dne03008   Ribosome biogenesis in eukaryotes dne03018   RNA degradation Brite KEGG Orthology (KO) [BR:dne00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     112984098 (XRN1)   09123 Folding, sorting and degradation    03018 RNA degradation     112984098 (XRN1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:dne03019]     112984098 (XRN1)    03009 Ribosome biogenesis [BR:dne03009]     112984098 (XRN1)    03016 Transfer RNA biogenesis [BR:dne03016]     112984098 (XRN1)    03036 Chromosome and associated proteins [BR:dne03036]     112984098 (XRN1) Messenger RNA biogenesis [BR:dne03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      112984098 (XRN1)   mRNA degradation factors    5'-3' decay     5' exonucleases      112984098 (XRN1) Ribosome biogenesis [BR:dne03009]  Eukaryotic type   Pre-60S particles    RNases     112984098 (XRN1) Transfer RNA biogenesis [BR:dne03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     112984098 (XRN1) Chromosome and associated proteins [BR:dne03036]  Eukaryotic type   Gene silencing    piRNA pathway     112984098 (XRN1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  112984098 NCBI-ProteinID:  XP_025957473 Ensembl:  ENSDNVG00000007061 LinkDB All DBs Position Unknown AA seq 1774 aa AA seqDB search MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRLVKEPEDKIKKALEKGE TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKSQRACA PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL HINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFSEVFVDLKW FESKVGNKYLNEAAGIAAEEARNNKQKKHKAQENSICLAALEKNEDEVVTSKNVLEDEPE DDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYY PYHYAPYLSDIRNISELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMISPDSPI IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKCLKEEEKRRNTHSACLMY WYDKDTEFKYMSPWPEKFPAIERCRSRYKTIPLDAWHVEITHNKITKINKSALYFCGFPT LKHIKHKFYLKKSGVQVFQQSSHGENMMLEIIVDENSKEQTVENVASLVLGKLVFVNWPH LEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQNAWLKEVQGVSEYY QRRKGIIIHETSVVVYAQLLTGNRYQLNQNGDVYLEKQWSKQVLPFVYQTVVKDIKAFDS RFSNIRTLDDLFPPGSTAFMLGSPYYGCMGEVQDSRDVITEGRIRVVFNIPCEPQLDPLI QNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNK KNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYIAKNSQEDIFYEDDIWPGEDE NGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVK PHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGASRETDVLFE VLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGNRSEMGNQKLTAIVKPQPAVNNYNSY ASDLSSVCSQKVHLGGLNHSPRSLFVPTQQLSGRQHYNLRAENQGNSSSLQKGSFLSGSQ KNKPQSKQDDEFCSIWQSLQGSGKSHHIQQSMHEKGAVLPQEIKLGTGNQFYKPGFNESS LKGQQRKQEPYKKFKEDSKVTRSESQPHNKIPNKQNFAGLNKYNVKLLKRNESPNVPVMQ KASVDGPCTAGKKDNELESLLASLKISKENEVQTNSKEARATNEEHLSPQSFAMKGTQML KEILKIDGSDLETKNEVKSQVNDVPAPASRQDSHGAALQYRQTKKMAAYMNKPLSTGGPQ TASALETGGHPFIGPQPTLSTPVSELSHICSLLGMSQPDFSFLKTPQTMTVCHIKLSNGL LVHGPQCHSETEAKEKAALFALQRLSSIGVNFPLPPPPPVFPNYQPLGVPVPPGSIPPVF TQPPANIMXPSSHMFGPMSWGAPVPIHGKHYYPGSYPGNMPLAGTIPVGTHNQFIPLQVT KKRAASKKNFELKEFQSSPQAATLKNEQPVSSDHIQQDSSSAPLKSTQAAQSTVSFQDNV TAPSVPHKKSTPNTSSKRKPRKLAVNFGAPKSSE NT seq 5325 nt NT seq  +upstreamnt  +downstreamnt atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg ctgaaggagcatcagattccagaatttgacaacttatacctggacatgaatggtattata catcagtgttcacatcccaatgatgatgatgttcacttcagaatctcagaagataagatt tttgctgatatttttcactatttggaagtactatttcgcattattaaaccaaggaaggtt ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga cgctttaggcttgtaaaagagcctgaggacaaaataaaaaaggccttagaaaaaggagaa actctccctacagaagccagatttgactctaattgtattacaccaggaactgaattcatg gccagattgcacgaacatcttaaatactttgtaaatatgaagatttccacagacaaatcc tggcaaggagtaacagtctacttatcaggccatgagactccaggggaaggggaacataaa attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaaggcac tgtctctatggtttagatgctgacttgattatgctgggattaacaagtcatgaagcacac tttgcactcttaagagaagaagtcagatttggtggtaaaaaatctcaaagagcatgtgcg ccagaggaaaccacatttcacttactacacttatcactaatgagagaatatattgattac gaattttcaccagtaaaagacaaaatttcctttgaatatgatattgaaaggataatagat gattggatcttaatgggtttccttgtaggaaatgattttatccctcatctacctcattta catattaatcatgatgcactgccgctactttatagaacatacatggctatcttgccagaa cttggaggttacataaatgaaaacgggcatctgaacttaaaacgctttgagaagtatctc acaagattgtcagattttgatcgtgaacacttcagtgaagtctttgtagacttaaagtgg tttgaaagtaaagtaggcaataaatacctcaacgaggcagctggtattgcagcagaagag gccagaaacaataaacaaaagaaacataaggctcaggaaaattctatatgtttggctgct ttagaaaaaaatgaagatgaagttgtgacctctaaaaatgtgttggaagatgaaccagaa gatgatgatctttttgaaactgagtttaggcaatacaagagaacttactacatgactaag atgggtgtagaagtagtttctgatgacttcttggctgatcaagctgaatgttatgtccaa gcaatacaatggattttgcattattattaccatggagttcagtcgtggagctggtattat ccttatcattatgcaccttatctgtcagatattcgcaacatcagtgaactcaaaatcaaa tttgaactgggaaaacctttcatgccatttgaacagcttcttgctgtacttccagcagct agtaaagatttgttacctaaatgttaccagcatttgatgattagtccagactctcctatt atagagtattatccaccagattttaaaactgacctgaatggaaaacagcaagaatgggaa gctgtagtattaatcccatttattgatgagaaacgactgctgcaggccatggaatcatgt aataagtgcctaaaagaagaggagaaacgaagaaatactcacagtgcttgcttaatgtac tggtatgacaaagatacagagttcaagtacatgtcaccgtggccagaaaaattccctgca atagaaaggtgtcgttccaggtataaaacaattcctttggatgcctggcatgtagaaata acccacaataaaataactaaaataaacaagagtgcattatatttctgtggatttcctact ttaaagcacattaaacataagttctatcttaagaaaagtggtgtacaggtgtttcagcaa agcagccatggagaaaatatgatgttagaaatcatagttgatgagaattcaaaagaacag acagtagaaaatgttgccagtttggtacttggaaagcttgtttttgttaactggccacac ctcgaagaagccagagttgttgctgtgtcagatggagaaactaagttttatttggaagaa ccacatggaacacagaagctttacatgggaaatgcagtgcccccaactaaagtggcatat gttggagataaggaacaaaatgcttggttaaaagaagttcaaggagtttcagaatattac cagagaagaaaaggaataattattcatgaaacatcagtggttgtgtatgctcagttactc actggtaatagatatcaactaaaccaaaatggtgaygtttatttagagaagcagtggtca aaacaagttcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactct cgtttttcaaacatcagaactctggatgacttgtttcctcctgggagtactgcctttatg ctgggatctccttactatggctgcatgggagaagttcaagattcacgcgatgtgatcaca gaaggtagaattcgcgtggttttcaacattccgtgtgaaccccagcttgatccgttaata cagaaccagcataaatattctgtgaaatacaatcctgcatatattttggccagtcgtctt ggagtaagcggctatcttgtctccagatttacagggagtatctttattggaagaggatca aagaaaaatcctcatggagatcacaaagcaaatgtggggctgaacctgaaattcaataag aaaaatgaagaagttcctggctatactaagaaagttggaaatgaatggatgtactcttct gcagtagaacaactacttgctgaatatttagaaagggtacctgagctatttaattatata gccaagaatagccaagaagatatattctacgaagatgacatttggcctggcgaggatgag aatggggctgagaaagttcaagaaattgttgcctggctaaaggcacatcctgtttctgct ttgtctcgctcatcttgtgacttacaaattttggatgcagccattgttgagaaaattgaa gaagaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcgagtaactgtgaaa cctcatttgctatatagacctttagaacaacagaatggggttgttccagatagagatgca gagtataggctgtttgaccgtgttgtcaatgtgagagagaacttttctgttcctgttggt cttcgaggtaccattataggaattaaaggagccagtagagaaacagatgtgctctttgaa gttttgtttgatgaagaattccttggaggcctaactataaggtgctcacctgccagaggt tatcgtctgccatcaagtgccttaattaatctatctcatggtaatcggtcagaaatggga aatcaaaaactgacggccatagttaaaccccagccagctgtgaataactacaattcatat gcatctgatctatcatctgtatgctcacaaaaagtgcatctgggaggtctcaaccattct cctcgctccctttttgttcctactcaacaactgagtggaagacagcattacaatctcagg gctgaaaatcagggcaactccagttcactccagaaaggatcatttttgagtggcagtcag aaaaataaaccacagagtaagcaagatgatgaattctgcagcatatggcaatcattgcag ggttctgggaagtcacaccatattcagcaaagcatgcacgagaagggtgcagttctacct caggaaatcaagctgggaaccggcaatcagttctacaagccaggcttcaatgagagcagc cttaaaggccagcaaagaaaacaggagccatataaaaagtttaaagaagattctaaagtt acaagaagtgaaagtcagccacataataagataccaaataaacagaattttgcaggactg aataagtacaatgtcaaacttttgaagagaaatgaaagtcccaatgtgcctgtaatgcag aaggcttcagttgatggtccctgtacagctggaaagaaggacaatgaacttgaaagcctt ctagcttctttgaaaatttccaaagaaaatgaagtgcagactaactccaaggaagcaaga gctacgaatgaagaacatctgtcaccgcagtcatttgctatgaaaggaacacagatgctc aaagaaattttgaagatagatggctctgacctggaaaccaagaatgaagtgaaatcccaa gttaatgatgttcctgctccggctagtagacaggattcgcatggagctgccttgcaatat agacaaacaaaaaaaatggctgcttatatgaacaagcctcttagcactggaggccctcag actgcatcagcactggaaactggaggtcaccctttcattggtccacagcctacactgtct actcctgtttctgaactttctcatatttgttctcttcttggaatgtcacaacctgatttc tctttcctaaaaacaccacagaccatgacagtttgtcacataaagttatcsaatggtttg ttggttcacggaccacagtgtcattctgaaactgaagccaaggaaaaagctgcgctcttt gctttacagcgattgagctctataggagtgaacttccctttgcctccacctccaccagtg tttccaaattatcagcctctgggagttcctgtaccacctggatctattcctccagtcttt acacagccccctgctaatataatgcytccatcatctcacatgtttggtccaatgtcctgg ggagctccagtgcctattcatggcaaacattattatcctggttcctatccaggaaatatg cctcttgcaggaactataccagttggtactcacaaccagtttatacctctgcaggtaact aaaaaaagggctgctagcaagaaaaactttgagctcaaggagtttcagagttcccctcaa gctgcaacactaaagaatgaacagccagtgtcttctgaccacattcagcaagatagttct tcagctcctttaaaatctactcaagctgctcaatccactgtttcatttcaagacaatgtg actgctccaagcgttcctcataaaaaatcaacaccaaacacttccagcaagcgaaagcca agaaagctggctgtcaattttggcgcaccaaaatcttcagaataa

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