Dromaius novaehollandiae (emu): 112993961
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Entry
112993961 CDS
T07572
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dne
Dromaius novaehollandiae (emu)
Brite
KEGG Orthology (KO) [BR:
dne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dne03016
]
112993961 (RTCB)
Enzymes [BR:
dne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
112993961 (RTCB)
Transfer RNA biogenesis [BR:
dne03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
112993961 (RTCB)
Prokaryotic type
tRNA splicing ligases
112993961 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
112993961
NCBI-ProteinID:
XP_025973805
Ensembl:
ENSDNVG00000007856
UniProt:
A0A8C4JLR2
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagctcgacaagaactgctgg
cgcatcaagaagggcttcgtgccgaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctcatgttcgaggaactgcgcaatgcctgccgcggcggaggtgcaggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcattacctggcattgttcat
agatcaataggccttccagatgtccattcaggctatgggtttgccattggcaacatggct
gccttcgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttactacgtacaaatttggacgaaagtgatgtacagcctgtgaag
gagcagctcgctcaggctatgtttgaccacattcctgttggtgtgggctccaagggtgtc
atccccatgaatgccaaggatttggaagaggctctcgaaatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgatcccaacaaggtttcctcaagagcaaagaagaggggcctccctcagctgggg
accctgggagcaggaaaccattatgccgagatccaggtagtggatgacatttacaacgaa
tatgctgcgaggaaaatgggcatcgaccacaaggggcaggtgtgcgtaatgatccacagc
ggcagcagaggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagcc
atgaaacgggacaaaatcatagtgaatgatcgccagctggcatgtgccaggattgcctct
gcagaaggacaggattacctgaagggaatggcagctgctgggaactatgcatgggtcaac
cgctcttctatgacttttttaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtatctcacaacattgccaaagtggagcaa
catgtagtggatggaaaagagcggactcttctggtgcacaggaagggatcaaccagggcc
ttccctcctcaccatcccctwattgctgttgattaccaactgactggacagcctgttctg
attggcgggactatgggcacctgtagctacgttcttactggcacagagcaaggcatgact
gagaccttcggaactacttgtcatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaaactggctgacatgggcattgccatccgt
gttgcttctcccaaactggttatggaagaagcaccagagtcttacaagaacgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaattgagacctatt
gctgttattaaaggctag
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