Dermacoccus nishinomiyaensis: HX89_03710
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Entry
HX89_03710 CDS
T03223
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HX89_03710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dni03021
]
HX89_03710
03400 DNA repair and recombination proteins [BR:
dni03400
]
HX89_03710
Enzymes [BR:
dni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HX89_03710
Transcription machinery [BR:
dni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HX89_03710
DNA repair and recombination proteins [BR:
dni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HX89_03710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIF40204
UniProt:
A0A075JE65
LinkDB
All DBs
Position
793781..797677
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIREWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEQRHADLPSLENQIEVEKKELENRRDADINTRSTKLEAD
LAELEKEGAKADARRKVRESAEREMTQIRKRADQQIERLEQVWDRFKNLKVQDLEGDEIL
YREMRDRFGLYFEGGMGAAALQKRLENFDLDAEAELLREIIATGKGQKKTRALKRLRVVT
AFQQTENKPAGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVDLEHAQNIKSAKRMVERAR
PVVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPQLVEGKAVQIHPLVCSAFNADFDGDQ
MAVHVPLSSEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSEVLDADEMKD
EDIRAFSTVAEARMAFDAGEIKIGTPISVRLRDFVPTAGTVLPDGVEADENGFVSELRIR
TTLGRAIFNGTLPEDYEYINKPVDKKVLSAIVNDLAERYSKVQVAASLDALKETGFHWAT
RSGTTVAISDVVMPSNKDEILESYDAKAAKVQLQFDRGLITDDERRQELIEIWTQAANEV
SKQMENNFPKDNPIYRMVNSGARGNWFQLRQLAGMRGLMANPKGEIIPRPIKANFREGLS
VLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTKRGLVLPIAQRN
SDGQLVEHEDVESSVYARNVAQTVEIDGETFLQAGDDLGDVALSKLIDAGIEEVKVRSVL
TCESRVGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAAGDDIT
QGLPRVVELFEARTPKGVAPIAEASGKIEIEETDKARRINLIPDDGSEPHAYPVSKRARL
LVEDGQRVEVGTLLVQGAIDPKQVLRILGPREVQKHLVDEVQGVYRQQGVSIHDKHIEVI
VRQMLRRVTIIEAGDTDLLPGELADRARFEDASRKAIAEGGRPASGRSELMGITKASLAT
ESWLSAASFQETTRVLTEAAMNVKSDPLLGLKENVILGKLIPAGTGLSRYRNVKVEPTEE
AKAAMYSLPDYQPYDYPVFGPGSGEAVRLDDATLGFDS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgacgagcttcgcatcggcctcgcgaccgcggacgacatc
cgcgagtggtcgcacggcgaggtcaagaagcccgaaaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgacgcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgtttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcacgcgctccgcggttcgtcgcgagcgcatgggccacatcgagctcgccgcgccg
gtcacgcacatctggtacttcaagggtgtcccgagccgtctgggctacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctcggtcgac
gaggagcagcgtcacgccgacctgccgtcgctcgagaaccagatcgaggtcgagaagaag
gaactcgagaaccgtcgcgacgcggacatcaacacgcgttcgacgaagctcgaggccgac
ctcgccgagctcgagaaggagggcgccaaggctgacgcccgccgcaaggtccgcgagtcg
gccgagcgcgagatgacgcagatccgcaagcgcgcggatcagcagatcgagcgcctcgag
caggtctgggatcgtttcaagaacctcaaggtccaggacctcgagggcgacgagatcctc
taccgcgagatgcgtgaccgtttcggtctgtacttcgagggcggcatgggcgctgcggcg
ctgcagaagcgtctcgagaacttcgacctcgacgccgaggcggagctgctgcgcgagatc
atcgcgacgggcaagggccagaagaagacgcgtgcgctcaagcgtctgcgcgtcgtcacg
gccttccagcagaccgagaacaagccggccggcatggttctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgcgacgtccgacctc
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgactcaagcgtctgctcgacctc
ggtgcgccggagatcatcgtcaacaacgagaagcgcatgcttcaggaggccgtcgacgcg
ctgttcgacaatggccgtcgtggtcgaccggtgacgggtccgggcaaccgcccgctcaag
tcgctgtccgacatgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgagtcgactactcgggtcgttcggtcatcgtcgtcggtccgacgctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcgcctc
gtcgacctcgagcacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgtgcccgc
ccggtcgtgtgggatgtcctcgaagaggtcatccgtgagcaccccgtgctgctcaaccgc
gcgccgacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgaaggcaag
gctgtccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacgtgccgctcagctccgaggcgcaggccgaggcccgcatccttatgctc
tcgagcaacaacatcctcaagcccgccgacggtcgtcccgtgacgatgccgacgcaggac
atgatcatcggtctgttccacctcacctccgaggtgctcgacgccgacgagatgaaggac
gaggacatccgcgcgttctcgacagtcgccgaggcccgcatggccttcgacgcgggcgag
atcaagatcggcacgccgatctcggtgcgtcttcgcgacttcgtcccgacggccggcacg
gtgctgcccgacggcgtcgaggcggacgagaacggcttcgtctccgagctgcggatccgt
acgaccctgggtcgcgcgatcttcaacggcacgctgccggaggactacgagtacatcaac
aagcccgtcgacaagaaggtcctctcggccatcgtcaacgaccttgcggagcgttactcg
aaggtccaggtcgcggcgtcgctcgatgcgctgaaggagaccggtttccactgggccacg
cgctcgggcacgaccgtcgccatctcggacgtcgtcatgccctcgaacaaggacgagatc
ctcgagagctacgacgccaaggccgcgaaggtgcagctgcagttcgaccgtggtctcatc
acggacgacgagcgccgtcaggagctcatcgagatctggacgcaggcggcgaacgaggtc
tccaagcagatggagaacaacttcccgaaggacaacccgatctaccgcatggtcaactcg
ggtgcccgtggtaactggttccagctgcgccagctcgcgggtatgcgaggcctcatggcc
aacccgaagggtgagatcatcccgcgtccgatcaaggccaacttccgagagggcctgtcg
gtgctggagttcttcatctcgacccacggtgcgcgaaagggtctggccgacaccgctctg
cgtacggccgactcgggttacctgacgcgtcgtctcgtcgacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcacgaagcgcggtctcgtcctgccgatcgcgcagcgcaac
tctgacggccagctggtcgagcacgaggacgtcgagagctcggtctacgcccgcaacgtg
gcgcagacggtcgagatcgacggcgagacgttcctgcaggccggtgacgacctcggtgac
gtcgcgctcagcaagctgatcgacgccggcatcgaagaggtcaaggttcgctcggtcctc
acctgtgagtcgcgtgtcgggacgtgtgcgaagtgctacggccgttcgctcgcgaccggc
aagctcgtcgacatcggcgaggccgtcggcatcatcgcggcgcagtcgatcggtgagccg
ggtacgcagctgacgatgcgtaccttccacaccggcggtgcggcgggtgacgacatcacg
cagggtctgccccgagtcgtcgagctcttcgaggctcgcacgccgaagggtgtcgccccg
atcgcggaggcatccggaaagatcgagatcgaggagaccgacaaggctcgtcgcatcaac
ctcatcccggacgacggctcggagccgcacgcctacccggtgagcaagcgcgcgcgcctg
ctcgtcgaggacggccagcgcgtcgaggtcggcacgctgctcgtgcagggtgcgatcgac
ccgaagcaggtgctgcgcatcctcggcccgcgtgaggtgcagaagcacctcgtcgacgag
gtccagggcgtgtaccgccagcagggtgtgtcgatccacgacaagcacatcgaggtcatc
gtgcgtcagatgctgcgccgcgtgacgatcatcgaggcgggtgacaccgacctgctcccg
ggtgagctggccgaccgcgcgcgcttcgaggacgcctcgcgcaaggcgatcgccgagggc
ggacgtccggcgtcgggtcgtagcgagctcatgggtatcacgaaggcttcgctggccacc
gagtcgtggctgtcggcggcatcgttccaggagacgacgcgcgtcctcaccgaggccgcg
atgaacgtcaagagcgacccgctgctcggcctcaaggagaacgtcatcctcggaaagctc
atcccggcgggtaccggcctcagccgttaccgcaacgtcaaggtggagccgacggaggag
gcgaaggccgcgatgtactcgctgccggactaccagccgtacgactacccggtctttggc
ccgggctcgggcgaggccgtccgattggacgacgcgacgctcggcttcgacagctga
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integrated database retrieval system
