Dermacoccus nishinomiyaensis: HX89_04775
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Entry
HX89_04775 CDS
T03223
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX89_04775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dni03021
]
HX89_04775
03019 Messenger RNA biogenesis [BR:
dni03019
]
HX89_04775
Transcription machinery [BR:
dni03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HX89_04775
Messenger RNA biogenesis [BR:
dni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HX89_04775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
ResIII
SAP
Motif
Other DBs
NCBI-ProteinID:
AIF40374
UniProt:
A0A075JEL7
LinkDB
All DBs
Position
999756..1001915
Genome browser
AA seq
719 aa
AA seq
DB search
MSEQPSAPAPAQSSPRGALSAMRLDELKQLAQSMGIPGISKMRKVDLVTAIRAARAEANG
VGGSRAKAAGVTSTAPTARRATSEQAEAAPSATEAPRREQGDAPAPQDDEPRRATRDAGA
REGDAASREGERSTRDEQEQPREQRTRRGRRGGEERKRASENAGSDQGDAQREGAAKDTG
SENDADGKTVDGKNVDAKDDASNGESRGRRDGERDERRQRRENGSNEPSGDKNSDGDARR
ERRDNSDNASGENGRDKRDEHENGRDKRDNRDSGNNGGSNRRERNNERNHNNDDDERGGR
RRRQRGRDRDRGERGNNRRGRNRDYDDDAPEVREDDVLIPVAGIVDVLDNYAFVRTTGYL
AGPTDVYVPMNIVKKNGLRKGDAVTGAVRALREGEQLPARQKFNALVRLDSVNGMTVEQA
KKRVEFGKLTPLYPQERLRLETAPNVLTTRMIDLVSPVGKGQRGLIVAPAKAGKTMVMQS
IANAITTNNPECHLMVVLVDERPEEVTDMQRAVKGEVIASTFDRPATDHTTVAELAIERA
KRLVEMGHDVVVLLDSITKLGRAYNLAAPASGRILSGGVDSAALYPPKKFFGAARNIENG
GSLTILATALVETGSKMDEVIFEEFKGTGNMELKLDRQLANRRIFPAVDVNNSSTRREEI
LLSGEELKIMWKLRRVLAALDQQQAVELLIDRLKKTKSNVEFLMQVQQTSNIKLDDEGN
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaacaaccgtctgcgcccgccccggcccagagcagcccgcgcggagcgctctcc
gcgatgcgtctcgacgaactcaagcagctcgcgcagagcatgggcattcccggcatctcc
aagatgcgcaaggtcgacctcgtgacggcgatccgcgccgcgcgcgccgaggccaacggt
gtcggcggcagccgcgccaaggccgcgggcgtcacctcgaccgctccgacggcccgtcgc
gccacgagcgagcaggccgaggctgcgccgtccgccaccgaggcgccccgccgtgagcag
ggcgacgcccccgcgccgcaggatgacgagccccgccgcgccactcgtgacgccggcgcc
cgtgaaggcgacgctgcttcccgcgagggtgagcgttccacgcgcgacgaacaggagcag
ccgcgcgagcagcgcacccgtcgtggccgccgcggtggcgaggagcgcaagcgcgcctcc
gagaacgcaggttcggaccagggcgacgctcagcgtgaaggtgccgcgaaggacaccggc
tccgagaacgacgccgacggcaagaccgttgatggcaagaacgtcgacgccaaggacgat
gcctcgaacggcgagagccgtggccgtcgtgatggcgaacgcgacgagcgtcgtcagcgc
cgcgagaacggctcgaacgagccctccggtgacaagaactccgacggcgacgctcgccgc
gagcgtcgcgacaacagcgacaacgcctcgggcgagaacggccgtgacaagcgcgacgag
catgagaacggccgtgacaagcgcgacaaccgcgactccggcaacaacggcggctccaac
cgtcgcgagcgcaacaacgagcgcaaccacaacaacgatgacgacgagcgcggtggccgt
cgtcgtcgtcagcgtggccgcgaccgcgaccggggcgagcgcggcaacaaccgtcgcggg
cgcaaccgcgactacgacgacgacgctcccgaggtgcgcgaggacgacgtcctcatcccc
gtcgcgggcatcgtcgacgtcctcgacaactacgcgttcgtgcgcacgaccggttacctc
gccggcccgacggacgtctacgtcccgatgaacatcgtgaagaagaacgggctgcgcaag
ggtgacgccgtcaccggcgcggtgcgtgcgctgcgcgagggtgagcagttgccggcgcgt
cagaagttcaacgcgctcgtgcgtctcgactccgtcaacggcatgacggtggagcaggcg
aagaagcgtgtcgagttcggcaagctgacgccgctgtacccgcaggagcgcctgcgtctc
gagacggccccgaacgtgctgacgactcgcatgatcgacctcgtgtcgcccgtcggcaag
ggccagcgtggcctcatcgtcgccccggcgaaggcgggcaagacgatggtcatgcagtcg
atcgccaacgcgatcacgacgaacaaccccgagtgccacctcatggtcgtcctcgtcgac
gagcgtcccgaagaggtcaccgacatgcagcgcgcggtcaagggtgaggtcatcgcctcc
accttcgaccgtccggcgacggaccacacgacggtcgcggagctcgccatcgagcgtgcc
aagcgcctcgtcgagatgggccacgatgtcgtcgtgctgctcgactcgatcacgaagctc
gggcgtgcctacaacctcgccgccccggcgagcggtcgcatcctgtccggtggtgtcgac
tcggccgcgctgtacccgccgaagaagttcttcggtgcggcgcgcaacatcgagaacggc
ggctcgttgacgatcctcgcgacggctctcgtcgagacgggttcgaagatggacgaggtc
atcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccgtcagctcgcg
aaccgccgcatcttcccggccgtcgacgtcaacaactcgtcgacgcgtcgcgaggagatc
ctgctgtcgggcgaagagctcaagatcatgtggaagctgcgtcgcgtgctcgccgccctc
gaccagcagcaggccgtcgaactgctcatcgaccgcctcaagaagacgaagagtaacgtc
gagttcctcatgcaggtgcagcagacgtcgaacatcaagctcgacgacgagggcaactga
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