Dermacoccus nishinomiyaensis: HX89_05505
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Entry
HX89_05505 CDS
T03223
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HX89_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dni03019
]
HX89_05505
03016 Transfer RNA biogenesis [BR:
dni03016
]
HX89_05505
Enzymes [BR:
dni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HX89_05505
Messenger RNA biogenesis [BR:
dni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HX89_05505
Transfer RNA biogenesis [BR:
dni03016
]
Prokaryotic type
tRNA degradation factors
HX89_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
ACBP4_C
Motif
Other DBs
NCBI-ProteinID:
AIF40486
UniProt:
A0A075JDV0
LinkDB
All DBs
Position
1149324..1151804
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AA seq
826 aa
AA seq
DB search
MEGPEIQFAEAVIDNGSFGTRTVRFETGRLAKQANGAVMAYLDDDTCLLSTTTASKQPKE
HFDFFPLTVDVEERSYAAGKIPGSFFRREGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQ
VVITVLAQNPDVQYDVLAINGASASTQISGLPFTGPIGGVRVSLIDGQWVAFPNFSDIER
SAFDMVVAGRIVGDDVAIMMVEAESTESTWNLVKNGTQAPTEEVVAEGLEAAKKFIRVLC
EAQMELAKQAAKEVQDFPVFLDYQDDVYEAVAKDGTDQTAAAMTIAGKAERESKLDEIKD
ALKAELAGEGKPFEGRESEVSAAFRSLQKQLVRERILRDKVRIDGRGLADIRALSAEVEV
LPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDSLSPTTRKRYMHHYNFPPFSTGETGRV
GSPKRREIGHGALAERALMPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNA
GVPLRAPVAGIAMGLVSAEIDGETQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDT
KLDGIPAQVLAGALTQARDARLHILDVMNEAIDAPDEMSPFAPRVLAVKIPVDKIGEVIG
PKGKMINQIQEDTGADLSIEDDGTVYIGATDGPSAEAARNAVNAIANPQMPEVGERFLGT
VVKTTTFGAFVSLLPGKDGLLHISEVRKLVGGKRIDAVEDVLKIGQKVQVELKEIDPRGK
LSLGVVEEAKADDAPEAPTETTPAAPADADADSADAAAKIADAAGHMDSGHASDEDGERK
PRQRRRGGRGRGRGNDAAEGRGDAASDQLVDAGDDDQAASATSEDA
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgagatccagttcgccgaagccgtcatcgacaacggctcgttcggcacc
cgcaccgtccgcttcgagacgggccgcctggccaagcaggccaatggcgccgtcatggcg
tacctcgacgacgacacgtgcctgttgtcgacgacgacggccagcaagcagccgaaggag
cacttcgacttcttcccgctgacggtcgatgtcgaggagcgcagctacgccgccggcaag
atccccggctcgttcttccgccgcgagggtcgcccctcgacggacgccatcctcacctgc
cgtctcatcgaccgcccgctgcgcccggccttcaagaagggtctgcgcaacgaggtccag
gtcgtcatcaccgtgctcgcgcagaacccggacgtgcagtacgacgtcctcgcgatcaac
ggcgcgtccgcgtcgacgcagatctccggtctgccgttcacgggcccgatcggtggcgtc
cgcgtctccctcatcgacggtcagtgggtcgcgttcccgaacttctccgacatcgagcgc
tcggcgttcgacatggtcgtcgccggccgcatcgtgggtgatgacgtcgccatcatgatg
gtcgaggcggagtcgacggagtcgacgtggaacctcgtgaagaacggcacgcaggccccg
accgaagaggtcgtcgccgagggcctcgaggccgcgaagaagttcatccgcgtcctgtgc
gaggcccagatggagctcgcgaagcaggcggccaaggaggtccaggacttcccggtcttc
ctcgactaccaggacgacgtgtacgaggccgtcgcgaaggacggcaccgaccagacggcc
gccgcgatgacgatcgcgggcaaggccgagcgcgagagcaagctcgacgagatcaaggac
gcgctcaaggccgagctggccggcgagggcaagccgttcgagggccgcgagtccgaggtc
tccgccgcgttccgctcgctgcagaagcagctcgtgcgcgagcgcatcctgcgcgacaag
gtccgtatcgacggccgcggcctcgccgatatccgcgcgctctcggccgaggtcgaggtg
ctgccgcgcgtgcacggttccgcgatcttcgagcgcggcgagacgcagatcatgggcgtc
acgacgctcaacatgctgcgcatggagcagcagatcgactcgctgtcgccgacgacgcgc
aagcgttacatgcaccactacaacttcccgccgttctcgacgggtgagacgggtcgcgtc
ggttcgccgaagcgtcgcgagatcggtcacggcgcgctcgccgagcgtgcgctcatgccg
gtgctgccgacgcgtgaggagttcccgtacgccatccgtcaggtctccgaggcactcggc
tcgaacggttcgacgtcgatgggttcggtctgcgcctcgacgctgtcgctgctcaacgcc
ggtgtgccgctgcgcgcgcccgtcgccggtatcgcgatgggtctcgtctccgccgagatc
gacggtgagacgcagtacgccgcgctcaccgacatcctcggcgccgaggacgcgttcggc
gacatggacttcaaggtcgccggtacgcgcgagttcgtcacggccatccagctcgacacg
aagctcgacggcatccccgcgcaggtgctcgccggcgcgctgacgcaggcccgcgacgcg
cgtctgcacatcctcgacgtcatgaacgaggcgatcgacgctcccgacgagatgtcgccg
ttcgctccgcgcgtgctcgccgtcaagatccctgttgacaagatcggtgaggtcatcggc
ccgaagggcaagatgatcaaccagatccaggaggacaccggcgccgacctgtcgatcgag
gacgacggcacggtctacatcggtgcgacggacggcccgagcgccgaggccgcgcgcaac
gccgtcaacgccatcgcgaacccgcagatgccggaggtcggcgagcgcttcctcggcacc
gtcgtcaagacgacgacgttcggcgcgttcgtctcgctcctgccgggcaaggacggcctg
ctgcacatctccgaggtgcgcaagctcgtcggcggcaagcgtatcgacgccgtcgaggac
gtcctcaagatcggccagaaggtccaggtcgagctcaaggagatcgacccgcgcggcaag
ctgtcgctcggtgtcgtcgaggaggccaaggccgacgacgcgcccgaggcgccgaccgag
acgacgccggccgccccggccgacgccgacgccgacagcgctgacgccgccgcgaagatc
gccgacgctgcgggccacatggactccggtcacgcgagcgacgaggacggcgagcgcaag
ccgcgtcagcgtcgtcgtggcggccgtggccgtggccgcggcaacgacgctgccgagggc
cgcggtgacgccgcgtccgaccagctcgtcgacgccggtgacgacgaccaggcggcgtcc
gcgacgtccgaggacgcctga
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