Dermacoccus nishinomiyaensis: HX89_05835
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Entry
HX89_05835 CDS
T03223
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dni
Dermacoccus nishinomiyaensis
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dni03019
]
HX89_05835
Enzymes [BR:
dni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HX89_05835
Messenger RNA biogenesis [BR:
dni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HX89_05835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
WHD_HA2
ResIII
NACHT
SLFN-g3_helicase
AAA_30
NAT10_TcmA_helicase
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AIF40535
UniProt:
A0A075JFH0
LinkDB
All DBs
Position
1233744..1237706
Genome browser
AA seq
1320 aa
AA seq
DB search
MTTPRPSQPSSNGDPAMPGPPLASSSRRRRPSRSRANASPRGDEPALAAEAIPDPTSEAA
SYVLRYPGHLPVVEAKDEILEAIRDHQVVIVAGETGSGKTTQLPKFCLELGRGRAGAIGH
TQPRRIAARSVAERLAEELESPLGETVGYQVRFVDESSKKTRVRVMTDGILLSQMQRDRD
LRQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFAEHFAGPDGP
APIIEVSGRTYPVETRYRPLVRELAPSKPGEDPKLEDVDQVTGIVEAAQELWRSGSGDGS
AQDILVFCSGEREIRDAADALKGADWGRARHDVEIVPLYARLSAAEQHRVFAPHHGRRIV
LATNVAETSLTVPGIRYVIDTGTARISRYSQRTKVQRLPIELISQASARQRAGRCGRVAD
GICIRLYSEEDFASRPEFTDPEILRTNLASVILQMTSLGLGDIARFPFVDAPDARQIKDG
LALLEELHALDTTAQGPRKKLTPTGRTLARLPVDPRLGRMLVAAAENGSLREVLVIVAAM
SIQDPRERPADAQAQADQQHARFKHEKSDFLSYLNLWNYVREQQRELSSSAFRRLCKREY
LHYLRLREWQDLHGQLKAACKQAKLFMSDNAAGEDAVHQALLTGLLSHVGLRDREKREYL
GARQARFAIQPGSTLFRRQPDWVMAGELVETTRMWARTNAVVDPAWIERAGAHLVKRSYA
EPHWERSRAGAVASERVMLYGIPIVAGRKAAYGAIDPEVSRDLFIRHALVEGDWDAQHQF
LKDNAALRARFADLEARARRRDLVVEDDVLFDFYDERVPADIVSGAHFDRWWKNERRTNP
SLLTFTEDLLVADDADAVDESAYPKSWRQGSLRLKLTYQFEPGADADGITVHVPLPVLNQ
VEDHGFDWLVPGMREELATALVKSLPKNIRRSFVPAPDHARRALALMDAQGRPGEVPFAD
ELGEALFRLTSVRVPAGSWDPGKLPDHLKVTFRVEDERGRKIRESKDLAALQDELAGRLR
QSIAKAAGDLEQQGLTQWTFGELPRQFTKSAGRQRMTGFPAVVDHGRDVAVEVLGTESEA
RQATRLGTRRLLLLNTQVPWKRILGLMSNRQKLALGNNPHGSMDTLMDDVLAAAVDAVIE
GMPGREVRDAEQFDVALTAIRQQVAPLVLEAAEKLAPVLEHAAKVQLELSRLTAPAAKAL
HDDVAAHLVALIHPGFVAETGLARLGHLDRYVRGMLERLDKGVTDLVRDADRADLVATVR
REYDDMVAGLRPERRGDADVLDIRWMIEELAVSQFAQRLGTAHPVSEKRIYKAMDAAEAR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtgactactccaagaccttcgcaaccttcctcgaacggcgatccggcgatgcccgggccg
ccgctcgcctcatcgtcccgccggcgcaggccgagccggagcagagcgaacgcgtcaccc
cgaggggacgaaccggccctggccgccgaggccatccccgaccccacatcggaagcagcg
tcgtatgtcctgcgctacccgggccacctgcccgtcgtcgaggcgaaagacgagatcctc
gaggcgatccgcgaccaccaggtcgtcatcgtcgcgggcgaaacgggttcgggcaagacg
acgcagctgccgaagttctgcctcgaactggggcgcgggcgcgccggcgccatcggccac
acccaaccgcgacgcatcgcggcgcgttcggtcgccgagcggctcgccgaagaactcgag
tcgccgctcggtgagacggtcggctatcaggtgcgcttcgtcgacgagtcgtcgaagaag
acccgcgtgcgcgtcatgaccgacggcatcctgttgtcgcagatgcaacgcgatcgggat
ctgcgtcagtacgacacgctcatcatcgacgaggcgcacgaacgcagcctcaacatcgac
ttcatcctcggctacctcaagcagttgctgccgcggcgccccgatctcaaggtgatcatc
acgtccgcgacgatcgacccggagcgcttcgccgagcacttcgccggcccggacgggccc
gcgccgatcatcgaggtctcggggcgcacctaccccgtcgagacgcggtatcggcccctc
gtgcgcgagctcgcgccgagcaagccgggggaggaccccaagctcgaggacgtcgatcag
gtgacgggcatcgtcgaggccgcacaggagctgtggcgctcaggcagcggtgacggttcg
gcgcaggacatcctcgtcttctgctccggtgagcgcgagatccgcgacgccgcggacgcg
ctcaaaggcgctgactgggggcgcgcgcgtcacgacgtcgagatcgtgccgctctatgcg
cgcctgtccgccgccgagcagcatcgcgtcttcgccccgcaccacgggcgacgcatcgtc
ctggcgacgaacgtcgccgagacgtcgctgacggtgccgggcatccgctacgtcatcgac
accggcaccgcgcgcatctcgcgctacagccagcgcacgaaggtgcagcgtctgccgatc
gagctgatctcgcaggcctccgcccgtcagcgcgccggccggtgcggccgcgtcgccgac
ggcatctgcatccggttgtactcggaggaggatttcgcgtcccgcccggagttcaccgac
cccgagatcctgcggacgaacctcgcgagcgtcatcctgcagatgacgtccctgggcctc
ggcgacatcgcgcgcttcccgttcgtcgacgcgcccgacgcccgccagatcaaggacggc
ctggcgctgctcgaggagttgcacgccctcgacaccaccgctcaggggccgcgcaagaag
ctgacgccgaccggccgcaccctcgcgcgcctgcccgtcgacccgcggctcggacgcatg
ctcgtcgccgccgccgagaacggctcgctgcgggaggtactcgtcatcgtcgcggcgatg
tcgatccaggatccgcgtgagcgccccgcggacgcgcaggcccaggcggatcagcagcac
gcccggttcaagcacgagaagagcgacttcctcagctacctcaacctgtggaactacgtg
cgcgagcagcagcgcgaactgtccagcagtgccttccggcgcctgtgcaagcgcgagtac
ctccattacctgcggctgcgcgaatggcaggatctgcacggtcagctcaaggcagcgtgc
aagcaggccaagctgttcatgagcgacaacgccgcgggcgaggatgccgtccaccaggcg
ctgctcacgggtctgctcagccacgtcgggctgcgggatcgtgagaagcgcgagtacctc
ggcgcccgccaggcgcgtttcgcgatccagcccggctcgacgctgttccgacgccaaccg
gactgggtcatggcgggcgagctggtcgagacgacccgcatgtgggcgcgcaccaacgcc
gtcgtcgaccccgcctggatcgagcgggcgggcgcccacctcgtcaagcgctcgtacgcc
gaaccgcactgggagcgctcgcgcgcgggggccgtcgcgtccgagcgggtcatgctgtac
ggcatcccgatcgtcgcgggccgcaaggctgcctacggcgcgatcgacccggaggtctct
cgcgacctgttcatccgtcacgctctcgtcgagggtgactgggatgcgcagcaccagttc
ctcaaggacaacgcggcgctgcgcgcgcgcttcgccgacctggaggcgcgcgcccgacgg
cgtgacctcgtcgtcgaggacgacgtcctgttcgacttctacgacgagcgcgtcccggcg
gacatcgtctccggggcgcacttcgaccggtggtggaagaacgagcgtcgcacgaacccg
agcctgctcaccttcaccgaggatttgctcgtcgccgacgacgcggacgccgtcgacgag
tcggcctacccgaagtcgtggcgacagggcagtctcaggctcaagttgacgtatcagttc
gagccgggtgcagatgccgacggcatcaccgtgcacgtgccgctgccggtgctcaaccag
gtcgaggatcacgggttcgactggctcgtgcccggtatgcgtgaggaactcgcgacggcc
ctcgtgaagtcgctgccgaagaacatccgacgcagcttcgtcccggctcccgaccatgcg
cggcgggcgctggcgctcatggatgcccagggtcgcccgggtgaggtcccgttcgccgac
gagctgggcgaggcgctgttccgtctcacctcggtacgtgtgcccgcggggagttgggac
ccggggaagctgcccgaccacctgaaggtcacgttcagggttgaggatgagcggggccgc
aagatccgtgaaagcaaggatctcgcggcgctgcaggacgaactcgccgggcgtctgcgt
cagtcgatcgcgaaggccgccggagacctcgagcagcaggggctgacgcagtggacgttc
ggtgagctgccccgccagttcaccaagtcggccggccgccagcggatgacgggctttccg
gctgtcgtcgaccacggccgtgacgtcgctgtcgaggtgctcggcaccgagtccgaggcg
cgccaggccactcggctcggcacccgccgtctgctgctgctcaacacgcaggtgccgtgg
aagcgaatcctcggcctcatgagcaaccggcagaagctcgcgctcggcaacaacccgcac
ggttcgatggacaccctcatggacgacgttctcgcggccgccgtcgacgcggtcatcgaa
ggcatgcccgggcgcgaggtgcgcgacgctgagcagttcgacgtggcgctcacggcgatc
cgtcagcaggtggcaccgctcgtgctcgaggcggccgaaaagctcgcgcccgtgctcgag
cacgccgccaaggtgcagctcgagctgtcacgattgacggcgcccgcggcgaaggcgttg
cacgacgacgttgccgctcacctcgtcgcgctcatccatcccggtttcgtcgccgagacc
gggttggcgcgcctcggtcacctcgatcgctacgtacggggcatgctcgagcggctcgac
aagggcgtcaccgatctcgtgcgtgacgccgaccgcgccgacctcgtcgcgaccgtgcga
cgcgagtacgacgacatggtcgccgggctgcgccccgagcgccgtggggacgccgacgtg
ctcgacatccgctggatgatcgaggagcttgccgtcagccagttcgcgcagcgtctgggc
accgctcacccggtgtccgagaagcggatctacaaggcgatggacgctgcggaggcccgc
tga
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