Dermacoccus nishinomiyaensis: HX89_05920
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Entry
HX89_05920 CDS
T03223
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni00470
D-Amino acid metabolism
dni00550
Peptidoglycan biosynthesis
dni01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HX89_05920 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HX89_05920 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
dni01011
]
HX89_05920 (murD)
Enzymes [BR:
dni01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
HX89_05920 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
dni01011
]
Precursor biosynthesis
Amino acid ligase
HX89_05920 (murD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
NAD_binding_7
FAD_binding_3
Pyr_redox_3
TrkA_N
AlaDh_PNT_C
F420_oxidored
Pyr_redox
FAD_oxidored
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AIF40551
UniProt:
A0A075JE29
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Position
1256643..1258148
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AA seq
501 aa
AA seq
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MSQHDLWALDPSYEPFAGERDLTHRDADWSGLSVLVIGLGVSGFAAADALLERGARVRVV
SRDHSDVMAERAQILDVLGADVAFGAEHMDAAPEGTHLIVTSPGVAPSAPIMQDAMSRGI
PVWGEVELAWRMRPREGGAPWLTITGTNGKTTAVTMLESMLKAQGLRAVAAGNVGMPLLE
AVLHPQPYDVIAVELSSFQLHWSRTVSPYASCCLNVAPDHVDWHGSYEEYKRQKGRVYER
TQVACVYNVDDPATEAMVEDAEVVDGCRAIGFTLGTPGPSMVGIVDDVLADRAFIAERRT
SAAELAILSDLGPNASAPHYVADALAAAALARSYGVTLAAVRQGLVDYTPQPHRMASVAE
VGGVRWVDDSKATNPPAAQASLQAFDPVVWIAGGLLKGAEVDDLVRANASRLRAAVLLGR
DRGIIADALAAHAPQVPVAVIETSDADEAMREAVAAANAAAQRGDTVLLAPAAASLDMYA
SYGARGDAFADAVAALSGSGA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
gtgagccagcacgacctgtgggccctcgacccctcgtacgaaccgttcgcgggggagcgt
gacctcacgcaccgcgacgccgactggtccgggttgtcggtgctcgtcatcgggctcggc
gtgtccgggttcgcggccgccgacgcgctcctcgagcgcggcgcccgcgtgcgcgtcgtc
tcgcgcgaccacagcgacgtcatggccgagcgcgcgcagatcctcgacgtcctcggcgcc
gacgtcgcgttcggcgccgagcacatggacgcggcgccggagggtacgcatctcatcgtc
acctcgccgggcgtggcgccgagcgcgccgatcatgcaggacgccatgtcgcgcggcatc
cccgtctggggtgaggtcgagctcgcgtggcgcatgcgcccgcgcgagggcggtgcgccg
tggctgacgatcaccgggaccaacggcaagacgacggccgtcacgatgctcgagtcgatg
ctcaaggcgcaggggctgcgcgcggtggccgccggcaatgtcggcatgccgctgctcgag
gcagtactgcacccgcagccgtacgacgtcatcgcggtcgagctgtcgtcgttccagctg
cactggtcgcgcacggtgtcgccgtacgcgtcctgctgcctcaacgtcgcccctgaccac
gtcgactggcatggctcctacgaggagtacaagcgtcagaaggggcgggtgtacgagcgc
acccaggtcgcgtgcgtctacaacgtggacgatcccgcgactgaggcgatggtcgaggac
gccgaggtcgtcgacggctgtcgcgcgatcgggttcacgctcggcacgccggggccgtcg
atggtcggcatcgtcgacgacgtcctcgccgaccgtgccttcatcgccgaacgacgcacc
agcgcagccgaactcgccatcctgagtgacctcggcccgaacgcttccgcaccgcactac
gtcgccgacgcgctcgccgcggccgcgctcgctcgcagctacggcgtgacgctcgccgcc
gtccgtcagggcctggtcgactacacgccccagccgcaccggatggcgagcgtcgccgag
gtcggcggcgtgcgctgggtcgacgactcgaaggcgacgaacccgcccgcggcccaggcg
tcgctgcaggcgttcgaccccgtcgtctggatcgccggcggattgctcaagggcgccgag
gtcgatgatctcgtgcgcgcgaacgcctcgcggctgcgcgccgcggtgctgctcggtcgt
gaccggggcatcatcgccgacgctctcgcagcccacgcgccgcaggtgcccgtcgccgtc
atcgagacgagcgatgccgacgaggcgatgcgtgaggccgtcgcagcggcgaatgcagcc
gcccagcgcggcgacaccgtgctgctcgcaccggcagcggcgagtctcgacatgtacgcc
tcctacggcgcgcgcggtgacgcgttcgccgacgcggtcgcggcactcagcggatccggg
gcatga
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