Dermacoccus nishinomiyaensis: HX89_09780
Help
Entry
HX89_09780 CDS
T03223
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dni
Dermacoccus nishinomiyaensis
Pathway
dni03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HX89_09780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dni03400
]
HX89_09780
Enzymes [BR:
dni01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HX89_09780
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HX89_09780
DNA repair and recombination proteins [BR:
dni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HX89_09780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
FlhC
zf-RING_4
Motif
Other DBs
NCBI-ProteinID:
AIF41188
UniProt:
A0A075JM76
LinkDB
All DBs
Position
complement(2092871..2093917)
Genome browser
AA seq
348 aa
AA seq
DB search
MPELPEVEVVRRGLDDHVVGRAFVSSRVTGSRVARRHLPGPQHLADALLGRRVASAQRRG
KYLWVTFEDAGPGSDGSADATVPLDRREGAVADDALVIHLGMSGQVLVESADSPLEKHAH
AVFDLSAPVKLSPPRKSGERAGSGEAVDAPGVTDASERPRSERSAQQMRFVDQRTFGGLF
LDDLTVAHGREVPASIAHIAPDPLEEAFDAGAVARLMRSKDVAIKRMLLDQGIVSGIGNI
YADEALWRAQVHGRRPGRMLTKTQLIGVLTAAQDVMRSALDHGGTSFDALYVNVNGASGY
FDRSLDAYGQQGKPCRRCGTLIVREQFMNRSSHFCPTCQKPPRTMDRS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaggtggaagtcgtacgacgaggcctggacgaccacgtggtcggc
cgggccttcgtctcgtcccgggtgacgggctcgcgcgtcgcacgccgtcacctgccgggg
ccgcagcatctggccgacgcattgctcggacgacgggtagcgtcggcccaacggcgcggc
aagtacctgtgggtgacgttcgaagacgccggtcccggttctgatggctcggcggacgcg
acggtgccgctggaccggcgcgagggtgcggtggccgacgacgccctcgtcatccacctc
ggcatgagtggacaggtgctcgtcgagagcgccgactcgccgctggagaagcatgcgcac
gcggtgttcgacctgtcggcgcctgtgaagctctcgccgcccaggaagtcgggggagcgc
gctggctcgggtgaggcggtggatgcgccgggggtgactgacgcatcggagaggccgcgc
tcggaacgatcggcccagcagatgcgcttcgtcgaccaacggacgttcggcgggttgttc
ctcgacgacctgacggtggcgcacgggcgcgaggtgcccgcgtcgatcgcgcacatcgcg
cctgacccgctcgaggaggcgttcgacgcgggcgccgtcgcgcggctcatgcgcagcaag
gatgtcgcgatcaagcggatgctgctcgatcagggcatcgtcagcggtatcggcaacatc
tacgccgacgaggcgctgtggcgcgcgcaggtgcacggtcgacgcccggggcgcatgctg
acgaagacgcagctcatcggcgtgctcacggcggcgcaggacgtcatgcgttctgcgctc
gatcatggcggcaccagcttcgacgcgctctacgtcaacgtcaacggtgcgagcggctac
ttcgatcgctctctcgacgcctacggtcagcagggcaagccgtgccgccgctgcggcacg
ctgatcgtcagggagcagttcatgaaccgctcgtcgcacttctgcccgacgtgccagaag
ccgccccggacgatggaccgttcctga
DBGET
integrated database retrieval system
