Entry |
|
Symbol |
LIG1
|
Name |
|
KO |
|
Organism |
dnm Dasypus novemcinctus (nine-banded armadillo)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:dnm00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101424282 (LIG1)
03410 Base excision repair
101424282 (LIG1)
03420 Nucleotide excision repair
101424282 (LIG1)
03430 Mismatch repair
101424282 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:dnm03032]
101424282 (LIG1)
03400 DNA repair and recombination proteins [BR:dnm03400]
101424282 (LIG1)
Enzymes [BR:dnm01000]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101424282 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101424282 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101424282 (LIG1)
DNA replication proteins [BR:dnm03032]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101424282 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101424282 (LIG1)
DNA repair and recombination proteins [BR:dnm03400]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101424282 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101424282 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101424282 (LIG1)
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
Unknown
|
AA seq |
896 aa
MQRSIMSFFQPMKEGKAKKPEKETSNSRKETEPPPKVALKERNGVLPESESPVKRPGRKA
ARVLGSEGEEEDEALTPPKGQKPAAASSQASPPSPVTSPESSPSPSDTSPSLSGIPKRRT
ARKQLPKRKIQDILGEQSEDKKRKAKRKKEEEEAETPTESLTEPEMTKRKEAEVAIKKEA
EEGDQPMTPPKSLKVSKAETLTESVSEPKVTVKKELQEADQAKPSPRPSKTLSSFFSPRK
PATKKEVKEEGSGAPGEEETKGSQDPTSYNPAKKNYHPIEDACWKPGEKVPYLAVARTFE
KIEEVSARLRMVKTLSNLLRSVVALSPPDLLPIVYLSLNRLGPPQQGLELGVGDGVLLKA
VAQATGRQLESVRTEAAEKGDVGLVAENSRSTQRLMLPPPPLTAARVFAKFREIARLTGH
ASTAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEIP
PAVVDAGKDKTAEAKKTWLEERGMILKQTFCEVPDLDRIVPVLLEHGLEHLPKHCRLSPG
VPLKPMLAHPTREVSEILKRFEEAAFTCEYKYDGQRAQIHVLESGEVKIFSRNQEDNTGK
YPDIISRIPKIKLPSVKSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCL
YAFDLIYLNGEVSSRPVLREAEGWRGQVLEPAGQGELGGHTWVVVLQVCSKDPEACEGLM
VKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASY
DEESEELQAICKLGTGFSDEELEEHYQSLQALVLPSPRPYVRADGAVAPDHWLEPSTVWE
VKCADLSLSPIYPAARGLVSDWGSCKFPAAGGLRETLEEVCVWGGGRWKTSGCSGW |
NT seq |
2691 nt +upstreamnt +downstreamnt
atgcagcgaagtatcatgtcatttttccagcccatgaaagagggcaaagccaagaagcca
gagaaggaaacatctaacagtaggaaagagacagagccccctccaaaagtggcactgaag
gagcggaatggagtgttgcctgagagcgagtccccagtgaagaggccgggaaggaaggcg
gcccgggtcctgggcagtgaaggggaggaggaggacgaagccctcacgccccctaaaggc
cagaagcctgccgcagcctcttcacaggcctcacctccaagtcctgtcacctctcctgag
agcagcccttctccctccgacacatctccctctctgtcagggatcccgaagcgtcgcaca
gctcggaagcagctcccgaaacggaaaatccaagatatcctgggagagcagagtgaggac
aagaaaagaaaagccaagaggaagaaagaggaagaagaagcagagaccccaacagaaagc
ctcacagagcctgaaatgacaaaaaggaaggaagcagaagtggctataaagaaggaagca
gaagagggggaccagcccatgacaccccctaaatccttgaaggtctccaaagcagagacc
ctgaccgaaagtgtttcagagcctaaggtgaccgtgaaaaaggaactacaggaggcagac
caggctaagccttcccccagaccttccaagacactcagcagtttcttctctccccgaaag
ccagcaactaaaaaagaagtgaaagaagagggatcaggtgctccaggagaggaggagacc
aagggatcccaggaccccaccagctacaatcctgccaagaaaaactaccatcccatcgaa
gatgcctgctggaaaccaggcgagaaagtcccatatttggccgtggctcgcacatttgag
aagatcgaggaggtttctgctcggctccgcatggtgaagacgctgagcaacctgctgcgc
tctgtggtggccctgtcccctccagacctcctgcccatcgtctacctcagcttgaaccgc
ctcgggccgccccagcagggcctggagcttggcgttggtgatggcgtccttctcaaggcc
gtggcccaggccacaggccggcagctggagtctgtacggaccgaggcagctgagaagggc
gacgtggggctggtggccgagaacagccgcagcacgcagaggctcatgctgcccccaccc
cctctcacggctgctagggtcttcgccaaattccgcgagatcgcccggctcaccggccac
gcttccacagccaagaagatggacatcatcaagggcctctttgtcgcctgccgccactcg
gaagcccgattcatcgccaggtccctgagtggacggctgcgcctcgggctggcagagcag
tcggtcctggccgccctcgcccaggccgtgagcctcacgcccccaggccaagaaatcccc
ccagccgtggtggatgctgggaaggacaagacagcagaggccaagaaaacgtggctggag
gagcgaggcatgatcctgaagcagaccttctgcgaggtgcccgacctggaccggattgtc
cccgtgttgctggagcacggcctggaacatctcccgaagcactgcagactgagcccaggg
gtacccctgaagccaatgctggcccatcccacccgggaagtcagcgagatcctgaaacgc
tttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccac
gttctggaaagtggggaggtgaagatcttcagcagaaatcaggaagacaatactggaaag
taccctgacatcatcagccgcatccccaagataaagctcccgtcagtcaagtctttcatc
ttggacaccgaagctgttgcttgggaccgagaaaagaagcagatccagccgttccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcatcagagatccaagtgcaggtgtgtttg
tacgccttcgacctcatctacctcaacggcgaggtgagttccaggccggtgctcagggag
gctgagggctggagggggcaggtgttggagccagctggtcagggtgagctgggaggccac
acgtgggtggtggttctccaggtgtgctccaaggatcctgaggcctgcgaggggctgatg
gtgaaaaccctggatgtcaatgctacctacgagatcgccaagaggtcgcacaactggctc
aagctgaagaaggactacctcgacggagtgggtgacaccctggacctcgtggtgattggt
gcctacctgggccggggcaagcgggccggccggtacgggggcttcctcctggcctcctac
gacgaggagagcgaggagctgcaggccatatgcaagctcgggaccggcttcagtgacgag
gagctggaggagcattaccagagcctccaggccctggtgctgcccagcccgcgcccctac
gtgcgggctgacggtgccgtggcccccgaccactggctggagcccagcaccgtgtgggag
gtgaagtgtgcggatctctccctctcccccatctaccctgcggcccggggcctggtgagt
gactggggaagctgcaagttcccggcagcaggaggcctcagggagactctggaggaggtg
tgtgtgtggggggggggcaggtggaaaacatccggctgctctggctggtga |