Dichelobacter nodosus: DNO_0601
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Entry
DNO_0601 CDS
T00517
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dno
Dichelobacter nodosus
Pathway
dno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNO_0601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dno03019
]
DNO_0601
03016 Transfer RNA biogenesis [BR:
dno03016
]
DNO_0601
Enzymes [BR:
dno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DNO_0601
Messenger RNA biogenesis [BR:
dno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DNO_0601
Transfer RNA biogenesis [BR:
dno03016
]
Prokaryotic type
tRNA degradation factors
DNO_0601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNA_pol_Rbc25
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ABQ13690
UniProt:
A5EVE2
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All DBs
Position
636742..639000
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AA seq
752 aa
AA seq
DB search
MVKKISENWQERDPYYRREIEKYGKNPLPSREFILLWLEEQGKLLTFPQIVKAFNMSEAR
GDLLHYRIKAMIAAGQLMRNRQGFIGVSHKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIP
PQYMRELMHGDKILARIKHVDGQGRKDYVPVEILQRGQKRVVGKLLNNQGIFSVIPENRR
LTQPIMIPKAALGDAVANQIVLAEITAYPSKHQQAIGTIVKVLGDEMAAGLEVAIAIENY
NIPNHFSDAVRAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKRGEN
YRLFVAIADVSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLC
LVCELTITPSGQIKNSKFHQAVIQSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLR
VVYQILRTAREKRQAIRFDFKEAEFLFDSEGKIESIQARNELESYQLIEECMVIANVAAA
KFLQKHKLIGLYRVHDKPSAERFEKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQD
RALLEKMILRSLPQALYSSENRGHFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESS
EVSLYSLEKMDEMAKHCSMTERRADDASRDAMDFLKCEFMSHRIGDEFFGEISSVTSFGL
FITLDEFFIDGLVHVSTLPSDYYHYDADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKK
IDFELLEHQGKKLNKKKRTRTDKRGRARKGKL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaaaaatcagtgaaaattggcaggaacgcgatccttattaccgcagagaaatt
gaaaaatatggaaaaaatccgttgccaagtcgcgaatttattctgttgtggttggaagaa
cagggtaaattgttaacttttccgcaaattgttaaagcgtttaacatgagcgaggcgcgc
ggagatttgttgcattaccgtattaaagcgatgattgctgccggacaattaatgcgcaat
cgtcaaggttttattggcgtgagccataaaatggatttggtcagcggttatgtgattgcg
caccctgaaggttatggttttttaaacgttgaaggcgatatcgacgacggttttattccg
ccgcaatatatgcgcgaattgatgcacggcgataaaattctcgcgcgcattaagcatgtt
gacgggcaggggcgcaaagattatgtgccggttgaaattttgcagcgcgggcaaaaacgt
gttgttggtaaattgctcaataatcagggaattttttccgtaattcccgaaaatcgccgg
ttaacgcagccgattatgattcctaaagccgcgctgggtgatgcggttgccaatcaaatt
gttttagcggaaattacggcttatcccagcaaacatcagcaagccatcggtaccatcgta
aaagtgcttggcgacgaaatggcagcgggattggaagtggcgattgcgattgaaaactat
aatattccgaaccatttttctgatgccgtacgtgcgcaaattgaaaaaatgcccgatgcg
ttgcaagaagctgattatgttgaccggctggatttgcgctatttgccgatggtgacgatc
gatggcatttccgcgcgcgattttgatgatgcgctttacgcggaaaaacgcggcgagaat
tatcgtttatttgttgccatcgctgatgtttcttattacgtaaaacccgattctccactc
gatgaagaagcttatgcacgcgggacttcggtttattttccggatcgcgtggtgccgatg
ttgccggaaaaattatctaatggtttgtgttctctcaatccgcatgtggatcgtttgtgt
ttggtttgcgagttgacgattacgccgagtggacaaattaaaaatagtaaattccatcaa
gcggtgattcaatcgcatgcgcggttgacgtatgaaaccgttgaaaaaattctcttttta
caagatcccttgatgcaggaaagttttgcgcaattgcgcgcgccgcttgaagatttgcgc
gtggtttaccaaattttgcgcacggcaagagaaaaacgtcaggcaattcgttttgatttt
aaagaagcggaatttttgtttgacagtgaaggaaaaattgaaagtattcaagcgcgtaac
gaattagaatcgtatcaattaattgaagaatgcatggtaattgccaacgtggcggcggca
aaatttttgcaaaaacataaattaattggtttatatcgcgtgcacgataaacccagcgcg
gaacgttttgagaaagtttttaattattttgccaaattgggctttaaaacgccgagtttt
gacacggtgacggtggaacattttgcgcatttattaaagaaagcagaagggcgtcaagat
cgcgcgttattagaaaaaatgattttgcgatctttgccgcaagcgctttatagttctgaa
aatcgtgggcattttgctttggctttgagtcattacgcgcattttacttcgccaattcgc
cgctatccggatttattggtgcaccgcgcgattcgtcattgtcttcaagaagaatcatca
gaagttagcctttattcgttggaaaaaatggacgaaatggcaaaacattgttccatgacc
gagcgccgcgctgatgatgccagtcgcgatgctatggattttctaaaatgtgaatttatg
agtcaccgcattggcgatgaattttttggcgagatttcgagcgtgacgagttttggttta
ttcattacgctggacgagttttttattgatggtttggtgcacgtttctactttgcccagc
gattattatcattatgatgccgataatgtgcggttgcttggcgagcgcagcggtcatagt
tatcaattgatggataaagtgcgcattcgcgtggttcaagtcaatattgaagataagaaa
attgattttgaattgctggagcatcagggtaaaaagttaaataagaaaaaacgcacgcgc
actgataaacgcggtcgcgcacgcaaaggaaaattatga
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