Devosia neptuniae: N8A98_11850
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Entry
N8A98_11850 CDS
T08915
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dnp
Devosia neptuniae
Pathway
dnp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N8A98_11850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dnp03400
]
N8A98_11850 (ligD)
Enzymes [BR:
dnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N8A98_11850 (ligD)
DNA repair and recombination proteins [BR:
dnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N8A98_11850 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
UXN71820
LinkDB
All DBs
Position
1836476..1839055
Genome browser
AA seq
859 aa
AA seq
DB search
MARQSDALLKDYRAKRDFTKTQEPSGASAADKSTGYRFVVQKHDATRLHYDFRIELDGVL
KSWAVTKGPSDNPEDKRLAVRVEDHPLDYGGFEGTIPEGEYGGGTVMLWDEGTWEPIGDP
HAALKDGDLKMVLHGQRMKGEWVLVHMKGRDSKRKSGPPRENWLLIKHRDKYARDKETLV
DRFTNSVSTGRDLAGIAKGLKPKKRTSVAADATWHSDKDKAVDNPLPAKTGRSKRTANLP
EFRAPQLATLVSEVPAGGDWLFEMKYDGYRCLAAIAGETVRLFTRTGKDWTEQFGAIVPP
LSRLTKGSALIDGELCAFDAKGRTDFSTLKAHLSNGGPLTYFAFDLLELDGEDLTRHKLI
DRKARLETLLGKIEASSLVQFSTHVTGNGQKVFDAICREGHEGIIAKEAHAPYRSERTRS
WLKIKCVHRQEFVIGGWSPSSKKKSFASLLLGTKEKGKLIYRGRVGTGFDTDSAEALQQQ
LDKLGRKTNPFDAVPRPVARAANWVAPELVAEIGYAEFTPDGVLRHPSFLGLREDKPAGE
VELEQPAAAPQKGKLDAQAGIAAAQAAGIKLTSPDRVVYPGQGVTKADLVAYYAAVAERM
LPYIAKRPLSLLRCPQGRAKYCFFQKHDTGGFPDAMKSLLITEKDGSREDYFYIEDLPGL
IAGTQMNVLEWHLWGADIDQVEKPERIIFDIDPDEGLGFAEVRSAARDISKALQALDLES
YPLVTGGKGVHVIAPLRPSMEWPEVKAFCKALAQRLADNEPDRFVATMSKAKRKGKLFID
YLRNERGSTAIAPWSSRSRQGAPAAVPVSWDELETITAANQFTLADAAARASLADPWKGY
FSTKQSITKAMLRAVTDET
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcaatcggatgccttgctcaaggattatcgcgccaagcgcgacttcaccaaa
acccaggagccttcgggcgcgtctgccgctgacaagtccacgggctatcgcttcgtcgtg
cagaagcatgatgcgacgcgcctgcactatgatttccgcatcgagctggatggggtgctc
aagagctgggcggtgaccaagggaccgtccgacaatccggaggacaagcggctggccgtg
cgcgtcgaggatcatccgctcgattatggcggctttgaaggcaccattcccgagggcgaa
tatggtggcggcacggtgatgctgtgggacgagggcacctgggagccgatcggggacccg
catgcggcccttaaggatggcgacctcaagatggtgctgcatgggcagcgcatgaagggg
gaatgggtgctggtccatatgaagggtcgcgacagcaagcgcaaatccggcccgccacgc
gagaattggctgctgatcaagcaccgggacaaatacgccagggacaaggaaaccctggtc
gatcgcttcaccaattcggtgtccaccggccgcgatctggccggtatcgccaaggggctc
aagcccaaaaagcgcacctccgttgcggccgacgcgacctggcattccgacaaggacaag
gccgtcgacaatccgctgccggccaaaacggggcggagcaagcgaacggcgaacctgccg
gaatttcgcgcgccacaattggccacgctggtctcggaagtccctgcgggcggcgattgg
ctgttcgaaatgaaatatgacggctatcggtgcctggccgccattgccggcgagacggtt
cgcctgttcacccgcaccggcaaggactggaccgagcagttcggggccatcgtgcccccg
ctgtcacggctcaccaagggcagcgcgctgatcgacggcgaattatgcgccttcgacgcc
aaggggcgcaccgatttttccaccctcaaggcgcatctctccaatggcgggccgctgacc
tatttcgcctttgacctgctggagctggatggcgaggatctcaccaggcacaagctgatc
gaccgcaaggcgcggctcgaaacgctgctgggtaagatcgaggcgtcctcgctggtgcaa
ttttccacccatgtcaccggcaatggacaaaaggtcttcgacgctatttgccgggagggt
cacgagggcattatcgccaaggaggcgcacgcgccctatcgcagcgaacgcaccagaagc
tggctcaagatcaaatgcgtgcaccgccaggaattcgtcatcggcggctggtcgccctcg
agcaagaagaagagctttgcctcgctgctgctgggcaccaaggaaaagggcaagctgatc
tatcgcggccgggtcggcaccggcttcgacactgacagtgcagaagccttgcagcagcag
ctcgacaagctggggcgcaagaccaatccgttcgacgccgtgccaaggcccgtcgcccgc
gccgccaattgggtggccccagagctggtggccgaaatcggctatgccgagttcaccccc
gatggcgtgctgcgtcatccatccttcctcggcctgcgcgaagacaagccggcaggcgag
gtggagctggaacagccggcggccgcgcctcaaaaaggcaagctcgatgcccaggccggg
attgcggccgcgcaagctgcggggatcaagctcaccagccccgatcgcgtggtctatccg
ggccagggcgtcaccaaggcagatttggtggcatactatgccgccgtggccgagcggatg
ctgccctatatcgccaaacggccgctgagcctgctgcgctgcccgcaggggcgggccaaa
tattgcttcttccagaagcacgataccggtggcttccccgacgcgatgaaatcgctgctc
atcaccgagaaggatggcagccgggaagactatttctacatcgaggacctgcccgggctg
atcgccggtacgcagatgaatgtgctcgaatggcatttgtggggagccgatatcgaccag
gtcgaaaagcccgagcggatcatcttcgatatcgatccggatgaaggattgggctttgcc
gaggtgcgctcggcggcgcgggatatcagcaaggcattgcaagcgctggatctggaaagc
tatccattggtcaccggcggcaagggcgtgcatgtcatcgcgccgttgcgcccaagcatg
gaatggccggaggtcaaggcgttctgcaaggccttggcccagcgcctggccgataacgag
cccgatcgcttcgtcgcaacgatgagcaaggccaagcgcaagggcaagctgttcatcgat
tacctgcgcaatgagcgcggctccacggccatcgccccctggtcgagtcgctcccggcag
ggggcaccggcggcggtgccggtcagttgggacgagttggagaccatcacggccgccaat
cagttcaccctggccgacgccgccgcacgggctagcctggccgacccctggaagggttat
ttttcgaccaagcagtcgatcaccaaggccatgctgcgcgccgtgacggacgagacctag
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