Devosia neptuniae: N8A98_21950
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Entry
N8A98_21950 CDS
T08915
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dnp
Devosia neptuniae
Pathway
dnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N8A98_21950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dnp03019
]
N8A98_21950
03009 Ribosome biogenesis [BR:
dnp03009
]
N8A98_21950
Enzymes [BR:
dnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N8A98_21950
Messenger RNA biogenesis [BR:
dnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N8A98_21950
Ribosome biogenesis [BR:
dnp03009
]
Prokaryotic type
rRNA helicases
N8A98_21950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UXN69838
LinkDB
All DBs
Position
complement(3902089..3904023)
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AA seq
644 aa
AA seq
DB search
MSLPETILAPLARALAAKGYETLTPVQAAIIEDETAGRDLLVSAQTGSGKTVAFGMAIAP
TLLGDAERFTEVGAPLALVIAPTRELALQVQRELDWLYAEAGARTASCVGGMDARTERRA
LERGAHIVVGTPGRLRDHITRGALDMSALRAVVLDEADEMLDLGFREDLEFILDAAPEDR
RTLLFSATVPKPIAQLAKTFQRDALRVAASSATEQHADIDYKLMLVPAAERENAIINTLL
YFESVNTIVFASTREGVKHLSARLHNRGFDVVTLSGELSQSERTNALQAMRDGRAHICVA
TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVIIAPMHRRNVAQRIL
KGAKLDVTMMGPPTASEIDARYREGILSNASLSLPVAEDEADFVGQLLARYSPEAIAAAY
LRQQFAARPAPEDVTENAMPDRPGDKDPRTREKFEGGTWFKVTVGRKHKAEPRWVLPMLC
KAGNVTKTAIGSIRIFDTESHFEVAAGKADAFAAAIARNGSGERGVTISSIEAPGERQAT
PRPSGKRPPGPVERYDPMAARPERSDRQQRYGSSTLGAEDFQPAPAEAPRPPRKDFDKPR
APKAPTKDKGKPKWAGKPAGDGAPYAKKDKPAGKDHKAKRKPQI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
ttgtccctgcctgaaaccattcttgctccgctcgcccgtgcccttgccgccaaggggtac
gagacgctgacgcccgtgcaagccgccatcatcgaagatgaaaccgccggccgcgatcta
ctcgtctccgctcaaaccggctccggcaagaccgtcgccttcggcatggccattgcgcca
accctattgggtgatgccgagcgcttcaccgaagtcggcgcccccctggcgctggtcatt
gcccccacccgcgaactcgccctgcaggtgcagcgcgaactcgattggctctatgccgaa
gccggcgcccgcaccgcctcctgcgttggtggcatggatgcccgcaccgagcgccgcgcg
ctcgaacgcggcgcccatatcgtcgtcggcacccccggccgtctgcgcgaccacatcacc
cgtggggccctcgacatgtcggcgctccgcgcagtcgtgctcgacgaagccgatgaaatg
ctcgacctcggcttccgcgaagacctcgaattcatcctcgacgccgcccccgaagatcgt
cgcacgctgctcttctccgcgaccgtgcccaagccgatcgcccagctcgccaagaccttc
cagcgcgatgccctgcgcgttgccgcctccagcgctaccgagcagcacgccgacatcgac
tacaagctgatgctggttcccgccgccgagcgcgaaaacgccatcatcaatacgctgctc
tactttgaatcggtcaacaccatcgtcttcgcctccacccgcgaaggcgtcaaacacctc
tccgcccgcctccacaatcgcggcttcgacgtcgtgaccctgtcgggcgagctctcccag
tcggagcgcaccaatgcgctgcaggccatgcgcgatggccgtgcccatatttgcgtcgcc
accgacgttgccgcccgcggcattgatctgccaaatcttgacctggtcatccacgccgac
ctgccgaccaatcccgacacactcctgcaccgttcgggccgcaccggtcgcgctggccgc
aagggcacctgcgtcatcatcgccccgatgcatcgccgcaacgtcgcccagcgcatcctc
aagggcgccaagctcgacgtcaccatgatgggcccgcccaccgcgagcgagatcgatgcc
cgctaccgcgaaggcatcctctccaacgcctccctcagcctgccggtcgccgaggacgaa
gccgatttcgtcggccagctgctcgcccgctacagccccgaagccatcgcggccgcctat
ctgcgccagcaattcgccgcccgcccagcccccgaagatgtcaccgaaaacgccatgccg
gaccggccgggcgacaaggacccccgcacccgcgaaaaattcgagggcggcacctggttc
aaggtcaccgtcggccgcaagcacaaggccgagccccgctgggtcctgcccatgctgtgc
aaggccggtaacgtcaccaagacggccatcggctcgatccgcattttcgataccgaatcc
catttcgaagttgctgccggcaaggccgatgccttcgctgccgccatcgcgcgcaatggc
tcgggcgaacgcggcgtcaccatctcgtccatcgaagcccccggcgaacgtcaggccacg
ccccgcccatccggcaagcgcccgccaggccccgtcgaacgctacgaccccatggccgcc
cgtcccgaacgcagtgaccgccagcagcgctacggctcgtccaccctcggcgccgaagac
ttccagcccgcgcccgccgaggccccgcgtccgcctcgcaaggacttcgacaagccccgt
gctcccaaggctcccaccaaggacaagggcaagccaaaatgggccggcaagcccgctggc
gatggcgctccctacgccaaaaaagacaaaccagccggcaaagaccacaaagccaagcgc
aagccgcaaatctga
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