Drosophila navojoa: 108654439
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Entry
108654439 CDS
T05898
Name
(RefSeq) uncharacterized protein LOC108654439
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dnv
Drosophila navojoa
Pathway
dnv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dnv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108654439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dnv03021
]
108654439
03019 Messenger RNA biogenesis [BR:
dnv03019
]
108654439
Transcription machinery [BR:
dnv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108654439
Messenger RNA biogenesis [BR:
dnv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108654439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108654439
NCBI-ProteinID:
XP_030237928
LinkDB
All DBs
Position
Unknown
AA seq
2135 aa
AA seq
DB search
MEHILQSYPEDARRIGEEYLSSLTDLNCNSKPLINMLTMLAEENINYAHVIVRVVEYHIS
QVPPEFKLPILYLIDSIIKNVKSSYVQLFGQCIVNIFLHAFESVQHSPSQVLEKVRERMY
LLRQTWNDVFPASKMYALDVKVKRLDNNWPITAKPSQPNKIHVNPAIHVNPDFLKTGMVS
MPVNSALPSDMEEILQAKTRELLELKKRKLELELEQTKMHLKEQERQLSQAADAIAVTPM
TAGMSAPTPILRPPGMETSVPPPNYPSGMRLVRPVAPIAPVVGQPPFVNKPKVHPINPAM
LNSVRQRDPRLARQMQPQQSAPMAAPMRALDPRLDSHKGGNSSTSSSVHKSSRSRSKSPL
HNSGSSGSNRSSKPSSSSNNHHSSSSSRKRSESKSSTASSSSSGSEFRHKNSNSSPVKRS
SSSRDKHSSSKDYSHNGSSPSSQSKRKSSSPASSPTKSKRNASHKSMSRTKSSGSRSTRS
RSRSPIYRDVDMRSGERSKSPEPTTKAAAAISSVVVPALPAAATTATAAPANDLEKRKKQ
FLILISHLLANSQVVSNTNDKVVELCTNYKPNWRHRRLDSRDYQGVRLGLVSLMVTLRVV
TYPVVLKLFVFCGSIKYKFLDTHFTLLEPGPRSPHLDASSKDVDLRPFAKLANMAAAVRP
ATPPAPSITLDTTRTNAATIADIGNSSNENSNNTSSTTKIASSASNATSNSSSSKLPTKV
SFKIQKPFNKLEKSTAHLSTATLLTTAAPTPTAIAAAAAATTAMMPASIRQSSPAPASVE
LLTHSAGEKRSATQMPANADTDEDEDKLQQPQQKRSKSAKLDALFGSEDVDLRRELAPSI
LAPGNVIVVDDDSMDNWEANKQMNKSPLSPAKKPTLDELRAKLAKTARHSNKQQAKPDKS
KDYPVTQRLKQLSSELKISDDSQEAHDEKMRTILSQAQEMFENNAINTEQYKDLVSKVVV
LNETGRKDRRREAPVDDEDLERNAARDAVLRKRIPKLKGNENHASSSPRSDGEPQQQQLL
PIVDKPQQQQQQPPPAKQLKNKRDGKRRKPSKWGEQVDPAAAQRAAWQLAQNNNNNNVKR
NAVAGGGNVGFRGMPWQHPPLVMAQAVVPPPPQPPSMLTLPPVPTVNITKAINSLDNPMA
DMVRSITIDGGTKEIRFYNQVAIIFMDGDEPHEIGFQNGQRAIYIDHNEQPLALSFNDDY
KPFQLDGQLHRIRFGHPSRELYIDDHWYEIYFGGPPVSLPIGNKLHVLKAEGPPPNVDIG
RVRRDLVVGKINMIVDAHTIVPLFLDGRQQTFHLGAEQHSLQFVDSFLYALLDGQLQKLE
YGGLPKSMKLNGGRNCFIRFGTLPKGVQAGKTHVQDMVYIKTEAPAEPPQPPPLPVAVLP
TAPAAAVATPEQPATVAAVGVPTNAAPVVPLPEAAAAALSNLNIDELFQKLVSSGIIAGT
TSNSSTVNVPALDTNSNSSKEATATTVAPATTVAPVVAATPAATVPAAPPLEPIKRIDLT
KPDTIKTRQAAVIASLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRERDSTRKPTS
RRWYYDLNDWKQYEEIEDVEERERNFLESQGQQLGPDAIDEVSQQRSLNSPVPSCAAGPT
DVDRGCDMCHEKFEQFYNEELEEWHLRSAIRVDDKIYHPLCYEDYKASLNPPPVVDNDTT
ANEDVDMLNASDDNAMDTLIKLEDESDDVKKTSSTVLADDDDDDDVIVLPNEEPSVTEIV
DDDDDEYVPVATSAEPETELSKEKPTSSEQEDKQQQQTNEQQLDNEHHQRVSENANESDV
EIQEPNIPFTDLDNYVEKEPVPMLNVKIKEEPKDDDEEDDDGFEDVGTVVQLLPLPEDEI
SILSSETLTHTIDSTASPATLERPASVTSLSLPANDDDLELEPVAAAASSEADFNGENPQ
ETHNLSAAGPAPALPLASIVNKIKINITKNTSSNSHNSASTTTTTDSQVSAISVIGATGN
ADQQQQQQQQQQQQQNSIQTISTIPVLCGGNTFVPKIATSSNSSTNTPPANISSISVIGS
SYGSSSSNSNNSSNSSRVPAAAATTSAAASSASQPATVSGLGTATQKSNTPPPSAAVEAE
PEPVIELKPALRQVTLKKTKKVQNGIETSGLCSIM
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggagcatatactgcaatcgtatccagaggatgcacgccgtattggcgaagaatattta
tctagtctcacggatttaaattgcaatagcaagccactgatcaatatgctcaccatgctc
gccgaggaaaacattaactatgcccatgtcattgtgcgcgtagtggaatatcacatcagc
caggtgccgcccgaattcaaattacccatactatatttaattgattcgataattaagaat
gtgaaaagcagctacgtgcagctgtttgggcaatgcatagtcaatatatttctccacgcc
tttgaatcggtacaacattcgccatcccaggtgctggagaaagtgcgggaacgcatgtat
ctgttgcgccaaacgtggaacgatgtgtttcctgcatccaagatgtatgccctggatgtt
aaggtcaagcgtttggataacaattggcccattacggcgaaaccaagccaacctaataaa
atacacgttaatcccgccatacatgtcaatcctgattttctcaaaaccggcatggtgtct
atgcccgtgaactcggctctgcctagcgacatggaggagatattacaggcgaaaacaaga
gagctactggagctgaagaagcgcaagctggaacttgaactggagcagactaaaatgcat
ttaaaggagcaggagcgtcaactaagtcaagcagctgatgcaattgctgtaacgcccatg
acagctggcatgtctgccccaacacctatactacgtccaccaggcatggagacaagcgtg
cctccgcctaactatccaagcggcatgcgacttgtgcgtccagttgcgccaatcgctcca
gtagttggccaacctccttttgtcaacaagccaaaggtgcatccaattaatccagctatg
ctcaattctgtgcgtcagcgtgatcctcgactggcccgtcagatgcagccgcaacagtca
gccccaatggcagcgcccatgcgtgcactagatccacgtctggacagtcacaaaggcggc
aactcttcgacctcctcttcagtgcataaatctagtcgttcacgcagcaagtctccattg
cacaattcaggcagcagtggcagcaatcgttcctccaaacccagcagcagcagcaataat
caccacagctccagcagcagtcgcaagcgcagcgagtcaaagagctcaacggcatcaagc
tcatcctctggctcagagttcagacacaagaatagtaacagctcgccggttaaacgctcg
tctagttcacgcgacaagcattcatcgagcaaggactattcccataatggtagctcaccc
tcaagccagagtaaacgcaagagcagctcgcctgcaagttcgccaaccaaatcaaagcgc
aatgcctcccacaaatccatgagtcgcacgaaatcgagtggctcgaggagcacgcgttca
cgcagtcgctcaccaatatacagggatgtggacatgcgtagcggggagcgcagcaaatcg
ccagagccaacaacaaaggcagcagcagcaatatcatcagtggttgttccagctttacca
gcagcagcaacaacagcaacagcagctccagcaaatgatttagagaaacgtaagaaacaa
tttttaattctaatctcacacttgttagccaacagccaagtcgttagcaatacaaatgac
aaagtagttgaattatgcacaaattacaaaccaaattggcggcaccgaaggcttgacagc
agggactatcaaggggtcaggttggggttggtatctttgatggtaactctaagggttgtc
acctatcctgtcgttctgaaactctttgttttttgtggaagcataaaatacaaatttcta
gatacacatttcacactacttgaaccagggccacgttcaccgcatttagatgcatctagc
aaggacgtcgatttgcggccctttgccaaattggccaacatggcggctgccgtaaggcca
gcaacgccgccggccccttccataacgctcgacacgacaagaacaaatgcagcaacgatt
gcagacatcggcaacagcagcaacgagaacagcaacaacaccagcagcacaacaaaaatt
gctagcagcgcctccaacgcaacgagcaacagttcttcctccaaattgcccacaaaagtg
tcgttcaaaatacaaaaaccgtttaataaattagaaaaatctacagcgcatttatcaaca
gcaacactgctaacaacagcagcaccaacaccaacagcaattgctgcagcagcagcagca
actacagccatgatgccagccagcattaggcaatcgtctccggcaccggcctcagtggaa
cttctgacgcactcagctggtgagaagcgctcggctacccagatgccggcaaatgcggat
acggatgaggatgaggataagttgcagcagccgcagcagaagcgcagcaaatccgccaaa
ctggatgccctctttggcagtgaagatgtggacttgcgtcgagagctggctccaagtatt
cttgcgccgggcaacgtgattgttgtcgacgatgattccatggacaactgggaggccaac
aagcaaatgaataagtcgcctttgtcgccggcgaagaaacctacattagatgagttgcgt
gccaaattggccaagactgcgcgtcacagcaataagcagcaggctaagccggacaaatca
aaagattatcccgtgactcaacgtctcaagcagctgtcgtcagagctgaaaatcagcgat
gattcacaggaggcgcacgacgaaaagatgcgtacaatactaagtcaggcacaggaaatg
ttcgagaataatgccataaatacggagcaatacaaggacctagttagcaaggttgtggtc
ttgaatgagactggcaggaaggaccggcgacgcgaagcacctgtcgatgacgaggacttg
gagcggaacgcagcgcgagatgctgtcttgcgaaagcgcatacccaaactgaagggcaat
gagaaccatgcgtccagttcgcctcgtagcgatggcgagccacagcagcagcagctgttg
ccaattgtcgacaagccacagcagcaacagcaacagccgccgcctgctaagcagctgaag
aacaagcgtgatggcaaacgacgcaagcccagcaaatggggcgagcaggtggatccggct
gcagcacagcgagctgcatggcaattagctcaaaacaataacaataacaatgtaaaacga
aatgccgtggcaggcggcggaaatgttggttttcgtggcatgccttggcagcatccgccg
ttggttatggcgcaagctgtcgtgccaccaccaccgcaaccaccctctatgctaacactg
ccgccagtcccaacggtgaacataaccaaagccatcaactcactggacaaccccatggca
gatatggtgcgcagcattacgatcgatggcggaactaaggagatacgtttctataatcag
gtggcaatcatatttatggatggcgatgagccgcatgaaattggcttccagaacggacag
cgtgccatctacattgatcacaacgagcagccgctggcgctcagcttcaatgatgactac
aaaccctttcagttggatgggcagctgcatcgcattcgtttcggacacccctctcgggag
ctgtacatcgatgatcattggtatgagatctactttggtggaccgcccgtttcactgccc
atcggcaataagttgcatgtgctgaaggcggagggaccgccgccaaatgtggacattggt
cgtgtgcgtcgagatttagttgtgggcaaaatcaacatgattgtcgatgcacacacaatt
gtgccgctgtttctcgatggccgccagcagacgttccatttgggcgccgagcagcactcg
ctccaattcgtggatagcttcctttatgcattgctagatggacagctgcagaagctggaa
tatggcgggctgcctaagagcatgaaattgaatggaggacgaaattgcttcatacgcttt
ggcacgctgcccaagggcgtgcaggcgggcaagacccacgttcaagatatggtgtacatt
aagactgaggcgccagcagaaccgccacaaccgccgccactgccagtggctgtattgcca
actgcaccagccgccgcagtagcaacgcccgagcagccagcaactgttgcagctgtcggt
gtgccgacaaatgctgctcctgttgtgcctttgcctgaagcagcagcagccgctctaagc
aatctcaacattgacgaactcttccagaagctcgtctcttctggcataattgctggcacc
accagcaacagcagcacagtcaacgtacctgctttggataccaattccaactctagcaaa
gaggcgacagcaacaactgtagcaccagcaacaactgtggcgcctgttgtagctgcaaca
cctgcagcaactgtgccggcagccccacctctcgagcccatcaagcgcattgatctgacg
aagccagacacaattaagactcgtcaggcggccgtgattgccagcctctatttgggcatg
cagtgcagcagttgtggcgtgcgcttcccaccggagcagaccataaagtacagccagcat
ttagattggcatttccgtcagaatcgaagggaacgcgattcgacacgcaagccgacgtcc
aggcgttggtactatgatctcaatgattggaagcaatacgaggaaattgaggatgtcgaa
gagcgagaaaggaatttcctcgaatcacaaggccaacaattgggacctgatgctatcgat
gaggtctcccagcaacgttcactcaattcacctgttcctagctgtgcagctggtccaaca
gatgtggatcgcggctgtgacatgtgccacgagaaattcgagcagttctacaacgaagag
ctggaggaatggcatctacgctcagccatacgcgtagacgataagatctatcatccacta
tgctacgaagactacaaagcttcgctcaatccacctccagttgttgataatgacacgaca
gcaaatgaagatgtggatatgctaaatgctagcgatgacaacgccatggacacgctgatc
aagctggaagatgaatcggatgatgtcaagaagacgtccagcacggtgctggccgacgat
gatgatgatgatgatgtcattgtgctgcccaatgaggaacctagtgttacagagattgtc
gatgacgacgatgatgaatatgtgcccgtcgctacttcagccgaaccagagacagagctg
tccaaggagaagccaacaagcagcgaacaggaagataaacaacagcagcaaacaaatgag
caacagcttgataacgagcatcatcaaagggtgtcagagaacgccaatgaatcagatgtg
gaaatacaggagccaaacattccgtttaccgatctggacaactatgtagaaaaggagcca
gtgccgatgctcaatgttaaaatcaaagaagagccgaaggatgacgacgaagaggatgat
gatggctttgaggatgtgggcacagtagtacaattgctgccgctgccagaagatgagata
tccatattaagtagcgaaacattaacccataccatcgattcgactgcatcgccagctacg
ctggagcgtccagcctcggtgacatctctctcattgccagccaatgacgatgatctggaa
ctggagccagttgctgcagcagccagcagcgaggccgattttaatggtgagaatccgcag
gagacgcataatttaagtgcagcggggccggcaccggcgttacctttggctagcatagtt
aataaaataaaaataaatatcactaagaatacaagtagtaatagtcataatagtgcctca
acaacaacaacaacggactctcaagtgtcggctataagcgtcattggcgccactggaaat
gccgatcagcaacaacaacaacagcagcagcagcagcagcagcaaaattccattcaaaca
atttccactattcctgtgctgtgtggaggcaacacgttcgttccgaagattgccaccagc
agtaacagcagcacaaatacgccgcctgccaacataagtagcatttccgttattggaagc
agctacggcagcagcagcagcaacagcaacaacagcagcaacagttcgcgtgtgcctgca
gcagcagcaacaacatcagcggcggcatcatcagcatctcagccagcaactgtcagcggt
ttgggaacggcaactcaaaagtcgaataccccaccaccatccgctgctgtcgaagctgag
ccggaacctgtgatcgaactaaagcccgcgctgcggcaggtgacgctgaagaaaacgaag
aaagttcaaaatggcatcgaaacttcgggcctgtgctcgatcatgtag
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integrated database retrieval system
