KEGG   Drosophila navojoa: 115562049
Entry
115562049         CDS       T05898                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
dnv  Drosophila navojoa
Pathway
dnv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dnv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115562049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dnv03021]
    115562049
   03019 Messenger RNA biogenesis [BR:dnv03019]
    115562049
Transcription machinery [BR:dnv03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     115562049
Messenger RNA biogenesis [BR:dnv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     115562049
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCHC zf-CCCH_3 zf-CCCH_4 zf-CCCH_2 zf-CCCH_RBM22 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 115562049
NCBI-ProteinID: XP_030238637
LinkDB
Position
Unknown
AA seq 279 aa
MDILLANVNSLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITKNGQECDKGSACPFR
HIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQ
SKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMNYLAGFCPEGPNCKHMHPRFELPPLADLS
KDQMHKKLPTCHYCGELGHKANSCKQYVGSLEHRNNINAMDHSGENNDDGAPNHQPPPFI
KVPTPLEEITCYKCGHKGHYANKCPKGHLAFLSNQHSHK
NT seq 840 nt   +upstreamnt  +downstreamnt
atggatatacttttggccaacgtaaacagcctgcagttcaaggcagagcgcgatctcatc
gaacaggtgggagctataccactgccgttctatggcatggacaagtccattgccgccgtc
tgcaatttcatcacaaaaaatggccaggaatgcgacaaaggcagcgcctgccccttccgg
cacatacggggcgatcgcaccatcgtctgcaagcactggctgcgtggcttgtgtaaaaag
ggcgaccagtgcgaatttctgcacgagtacgacatgacgaaaatgccagagtgttatttc
tattcgcgcttcaatgcctgccacaacaaagagtgcccgttcctgcacatcgatccccag
agtaaggtaaaggactgtccatggtacaagcgtggattttgccgacatgggccgcactgt
cgacatcagcatctgcgacgtgtgctatgtatgaactacctggccggcttctgtcctgag
ggacccaactgcaaacacatgcatccacgattcgagctgccgcccctcgctgatcttagc
aaggatcagatgcacaaaaaactacccacgtgccactattgcggagagcttggccacaaa
gcgaactcatgcaaacaatatgtgggcagcctggagcatcgcaataatataaatgccatg
gaccacagtggggagaataatgatgatggtgctccgaatcatcaaccgccgccgtttata
aaagtgcccacgccgctagaggagatcacctgctacaaatgtggacacaagggccactat
gccaacaagtgccccaagggtcatctggctttcctatcgaatcaacatagtcataaatag

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