Diuraphis noxia (Russian wheat aphid): 107166623
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Entry
107166623 CDS
T04900
Name
(RefSeq) uncharacterized protein LOC107166623
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dnx
Diuraphis noxia (Russian wheat aphid)
Pathway
dnx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dnx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107166623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dnx03021
]
107166623
03019 Messenger RNA biogenesis [BR:
dnx03019
]
107166623
Transcription machinery [BR:
dnx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107166623
Messenger RNA biogenesis [BR:
dnx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107166623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107166623
NCBI-ProteinID:
XP_015370860
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MTAKEKEVAEEYCNALADLNINSKPLINMLTMLAEENSAYAPIIVQCIERQLHKVQADSK
LPVLYLIDSVMKNIGQPYTPLFVQNIEKLFASTFIKVDEKTRGNMYKLRSTWNDVVTPTK
LHALDVMIHSIDKNWPLSAAPPNIHVNPKFLNNVNHTETPKPVQPITPNDIEEDISLREK
FIKKQKELLELQQKKLELELLHTKNQLEIQKKRSLNKINQSKNAFNASASSSTVSVSPSN
EEVYAKILPSENSRRITENPVKMSDASSISTESPSMPIKVIVSPSKKSTSLPAGQMFKNP
TQPFVSQQQNSEMVVSSPFFNVNQQIAKINPVSTQLLQTLNRDPRLRKVENVVKPSPSLT
NDVKQPIIKTKEDKKFDKPKRDSSKHRESKRKERSPSCSPSKKELSRKTHKKTERKERSL
KDEKYHKRRDEKKNIKEMDSKKKNILSNLKTDHDEKVSIKSAILPKIEEKLSKDEPKNDV
NLPSREAVDINVSKDKDLVTEVINEAGVNSSXNIISELEKTDSLEDSDSLKRLRIYMQTM
KKSPDPSTAAPLPLDMKNDSDIHAVKSNQNIIIKQQNDIDLRIKTPTVKRTSDSIKIDDT
EPAAKKSKSEIIDELFGAEDVDLRTLTAPTIVPTPPPPPQISEIXNPEVGKSWAKYKEIK
PDTFKTPYKSPAKKIPTELKETSMENNDTMDIDMRAKPTQNNKSHILRQAEEALNAGSIS
YDEYKKIMCQVIKMTEVEKLEEVNNTEDPNTKLKEYIIPKITLPVIGNGTDLKPILVETA
TIIEKPIDENSPGLGSWNIVTKKPSDVSGSDSDCSSKSCSTGSDESKKINKKSDSEBRTV
YKRRKTTFKRNEKENSKTRTWRNNKSWNSRPENGSRFSQNRIEPWSRGPRPNYSHSTRSL
VPPPMYEVPRPTAPFASSSPDWTVPVIPPSDPVILDMIAHDATKTISIDGVSREVRFYGP
TAITFVSWDDPREIYFQGTPKNIIFDDLFPVLCHFNSPDREFLLDGQPHRVRLGAPTREL
YLDGQFYECFFGGPPIFTDLGGVKRSVKLEGPPPSVNIGNTKRQDLVAGRIAIIIDNSYT
VPVYLDAKPQRIDVGNTALIFRFIDGLMRAMINDQPFKVNYNGPPQAIIVRGNKHYLRFT
RLPPNIRPGYAAISQMMGVVLTEDSSTESLPPISAPPIPQNFTGFEMTTLIPNEDINQLP
PQSFSSSYSLAPTTTSLPLLSNVPQKLESVTNSYVPPTVSAPTIPSVLPSDMDINELFKK
LVDSGIVPKDKPKEVVQSKLKKKEKEADNLTIKPVDFSDPSSLKQKQPGLIHNLYTGIQC
SSCGIRFTAEFTIKYSSHLDWHFRQNRREKMASKTVQSRKWYYDTSDWCKYEEQEDETTR
AASWFDIQAEKGAKEDEKLEEENVPCVPAGENSELAACYLCHDQFEQFYNEKDEEWQLKN
CVEKDKRLYHPMCHDDMIKTREEKIRKRNRAIEDAKQLENQRIEIKEEEQFDLKLTEGIK
IKDEKKEIIQLKDEEKLLTEKDPLINKEMSMEKEPVEIKEIXTENKAVLDKEIVTKTEIV
IETEAVIKTEAVMETETVIKTETVMETETLMETETVMETETVMETETFMETDETGIETQT
QTIKETETIMEIESIKPKENEDQITDGNLHQTEPVFQELQTEENTNTMKYEDLEIPDTME
IIQVTEASSPKLDEPIVEIVKNLSSPPITQEIVPEEIKPKSPSPVSTMTCSIDGNTDTEW
NVPVAPAMGTIKINISQKITPIVKPIVLSENTSIEPQSPTDFTQTFGEIDPDQPPPPGLE
METVVAPKMQREMKPRLMHNAKKLKEYPIVNKGKEMSGLCSIM
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaaagaaaaagaagtagcagaagaatattgtaatgccttagccgacctcaac
atcaatagcaaacctttgataaacatgttgacaatgctggctgaagagaactcagcttat
gcgccaatcattgtacagtgtattgaaagacaactgcataaggtgcaggccgacagcaag
ttaccagtgctttacttaattgactctgtcatgaaaaacattggacagccatatacacca
ctattcgttcaaaatattgagaaactttttgctagcactttcattaaagttgatgaaaaa
accagaggaaatatgtataaattacgttcaacgtggaatgatgttgtaacacctactaaa
cttcatgcccttgatgtaatgattcattctattgacaaaaattggcctctaagtgctgct
ccaccgaacattcatgttaatccaaaatttytaaataatgttaatcatactgagacacct
aaacctgtacaaccaattacacccaatgatatagaagaagacatatcgctaagggaaaaa
ttcattaagaaacaaaaggaattgcttgaactacagcaaaaaaaactagaactggaattg
ttgcataccaaaaatcaattggaaattcaaaaaaaaagatcattgaacaagataaatcaa
tcaaaaaatgcttttaacgcgagtgcatcatcttcgactgtgagtgtttcaccttcaaat
gaagaagtatatgccaaaattctgccatctgaaaattctcgaaggataactgagaatcca
gttaaaatgagtgatgcatcttctatcagtactgagtcaccttcaatgcccattaaagtt
attgtttcaccttctaaaaaatcaacatctttacctgcaggacaaatgtttaaaaatcct
acacaaccatttgtatcgcagcaacaaaattcagaaatggttgtttccagtccatttttc
aatgtaaaccaacaaattgccaaaatcaacccagttagtacacaattattacaaacttta
aaccgtgatccacgtttaagaaaagtagaaaatgttgttaagccatcgccatcacttact
aatgatgttaaacaaccaattatcaaaactaaagaagataaaaaatttgataaacccaaa
agagacagtagtaagcatcgagaatcaaaaagaaaagaaagaagtccaagttgttctcct
tccaaaaaagaactttccagaaagacacataaaaaaactgaacgcaaagaaagaagtttg
aaagacgaaaagtatcacaaaagaagagatgaaaaaaaaaatattaaggaaatggactca
aagaaaaaaaacatattatcaaatttaaaaactgatcatgatgaaaaagtgtctataaaa
agtgcaatactgccaaaaattgaagaaaagttatcaaaagacgaacctaaaaatgatgtt
aatcttcctagtcgagaagctgttgatataaatgtttctaaagacaaagatttagttact
gaagtaattaatgaagctggtgtaaatagttctgraaacattatttccgaattagaaaaa
actgattctctggaagattctgattctttaaaacgtcttcgtatctacatgcaaacaatg
aagaaatcacctgacccatcaactgctgctccactaccattagacatgaaaaatgactca
gacatccatgctgtaaaatccaatcaaaacataattatcaaacaacaaaatgacattgac
ctaagaattaaaaccccgactgtgaagaggacctccgattcaatcaaaattgatgataca
gaacctgcagcaaaaaagagcaaatctgaaatcattgatgaactctttggtgcagaagat
gtagatttacgaacattaactgctccgactattgtacctacaccaccacctccaccacaa
atttctgaaatatyaaatcctgaggttggtaaatcttgggcaaaatataaggaaataaaa
ccagatacttttaaaacaccatataagtctcctgccaaaaaaatacctactgaattgaaa
gaaacatctatggaaaataatgatacaatggacatagatatgagagctaaacctacacaa
aataacaaaagtcatattcttagacaagctgaagaagctttaaatgcaggaagcatatct
tatgatgaatataaaaaaattatgtgtcaggtgattaaaatgacagaagtggaaaaatta
gaagaagtaaataatacagaagatcctaatactaagttaaaggagtacattattccaaaa
attactctacctgttattggaaatggaactgatttaaaacctatcttagtagaaacagca
actataatagaaaaacctattgacgagaacagtcctgggcttggctcttggaacattgtt
acaaaaaaacctagtgatgtcagcggaagcgatagcgattgttcttcaaaaagttgttct
acaggttcagatgaatccaaaaaaattaacaagaaatcagattctgagratcgaactgta
tataaaaggcgtaaaacaacattcaaacgtaatgaaaaagaaaattctaaaactcgtact
tggagaaataataaaagttggaattcaagaccagaaaatggatccagattctctcaaaat
cgaattgaaccttggtctagaggacctcgtccaaattattctcattcaacaagatctctt
gttccaccgcctatgtatgaggtgcctagaccaactgctccgtttgcatcttcttcrcct
gattggacagtacctgttattcctccttcagatcctgtaatattggatatgattgctcat
gatgctacaaaaactatcagtattgatggggtatcaagagaagtacgattttatggtcca
accgcaattacttttgtatcttgggatgatcctagagagatttattttcaaggaactcca
aaaaatattatatttgacgatctttttccagttttatgtcattttaatagtcctgataga
gaatttttattagatggtcaacctcatagagtacggttaggtgcaccaactcgagaactt
tatttagatggtcaattctatgaatgtttttttggtggccctccaatctttacagatcta
ggtggtgttaaaagatctgttaaacttgaaggccctcctccttcagttaatatagggaac
acaaagcgacaagatttagttgctggtcgtatagctattattattgataactcttacact
gtgccagtctatttagatgctaaaccacagcgcattgatgtgggtaatacagcacttatt
tttcgttttattgatggtttgatgagagctatgattaatgatcaaccgttcaaagtcaac
tataacggaccaccacaagcaattattgtaagaggaaataaacattacttaagattcaca
agattaccaccaaacattagaccaggttatgctgctatttctcaaatgatgggtgtagta
ctgactgaagattcttctactgaatctttaccaccaatatctgctccaccgattccacaa
aatttcacaggttttgaaatgactacattaataccaaatgaagatattaaccaacttcct
cctcaatcattttcatcttcgtattctttagcaccaactacaacatcactacctctactt
tctaatgttcctcagaaattggaatctgttacaaattcttatgtaccacctacagtgtct
gcgcctacaataccttctgtcttacctagtgatatggatatcaatgagctatttaagaag
ttggtagatagtggaattgtgcctaaggacaagcctaaagaagttgtccaatcaaaacta
aaaaagaaagagaaagaggcagacaatttaaccataaaacctgttgatttttcagatcct
tcgtccttaaaacaaaaacaaccaggattaattcacaacttatacacaggaatccagtgc
agttcttgtggtattcgttttacggcagagtttaccattaagtatagtagtcatttagat
tggcattttagacaaaatagacgtgaaaaaatggcaagcaagactgtccaatctagaaaa
tggtattatgatactagtgactggtgtaaatacgaagaacaagaagatgaaactactaga
gctgcgagttggtttgatatacaagcagaaaagggtgctaaagaagatgaaaaattagaa
gaagagaatgttccttgtgttccagctggtgaaaatagtgaattagctgcctgttatttg
tgtcatgatcagtttgaacaattttataatgaaaaagatgaagagtggcaattgaagaat
tgtgttgaaaaagataaacgactttatcatcctatgtgccatgatgatatgattaaaact
cgagaggaaaaaattcggaagagaaatcgagctattgaagatgctaaacaattggaaaat
caaagaattgaaattaaagaagaagagcaatttgatttaaaattaacagaaggtataaaa
atcaaagatgaaaagaaagaaataatacaattgaaagacgaagaaaaacttttaactgag
aaagatccattaataaataaagaaatgtctatggaaaaagaaccagttgagattaaagaa
atatytacagaaaacaaagcagttctagacaaagaaattgttacgaaaactgaaatagtt
atagaaacagaagctgttattaaaacagaagcagttatggaaacagaaacagttataaaa
acagaaacagttatggaaacagaaacacttatggaaacagaaacagttatggaaacagaa
acagttatggaaaccgaaacatttatggaaactgatgaaacaggaatagaaacacaaacg
caaacaattaaagaaacagaaacaataatggaaatagaatcaatcaaaccaaaagaaaat
gaagatcaaattacagatggaaatttacatcaaaccgaacctgtttttcaagaattacag
actgaagaaaatacgaatacaatgaaatatgaggatttggaaattcctgatactatggag
ataattcaagttactgaagcttcatcgcctaaattagatgaacccattgttgaaatcgtt
aaaaatttgtcatcccctccaatcactcaagaaattgtacctgaagaaattaaacctaaa
tctccatctcctgtttccacaatgacgtgttctattgatggaaacactgacactgaatgg
aatgttcctgttgctcctgcaatgggcacaatcaaaataaacatcagtcaaaaaattaca
cctattgtaaaaccaatcgtcctctctgaaaacacatccattgaaccacagtcaccwaca
gatttcacacaaacgtttggagaaattgatcctgatcaaccaccaccaccaggacttgaa
atggaaactgtagtagctcctaaaatgcaaagagaaatgaaaccaagactgatgcacaac
gcaaaaaaacttaaggaatatccaatagtaaataaaggtaaagagatgtcaggattatgt
tcaattatgtaa
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integrated database retrieval system
