Diuraphis noxia (Russian wheat aphid): 107167875
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Entry
107167875 CDS
T04900
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dnx
Diuraphis noxia (Russian wheat aphid)
Pathway
dnx03008
Ribosome biogenesis in eukaryotes
dnx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dnx00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107167875
09123 Folding, sorting and degradation
03018 RNA degradation
107167875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dnx03019
]
107167875
03009 Ribosome biogenesis [BR:
dnx03009
]
107167875
03016 Transfer RNA biogenesis [BR:
dnx03016
]
107167875
03036 Chromosome and associated proteins [BR:
dnx03036
]
107167875
Messenger RNA biogenesis [BR:
dnx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107167875
mRNA degradation factors
5'-3' decay
5' exonucleases
107167875
Ribosome biogenesis [BR:
dnx03009
]
Eukaryotic type
Pre-60S particles
RNases
107167875
Transfer RNA biogenesis [BR:
dnx03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107167875
Chromosome and associated proteins [BR:
dnx03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107167875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
107167875
NCBI-ProteinID:
XP_015372569
LinkDB
All DBs
Position
Unknown
AA seq
1658 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSELVKDYQIPEFDNLYLDMNGIIHNCSHPNDDDPHFRITEETI
VKNIFHYLEVLFQMIQPQKLFFMAIDGVAPRAKMNQQRGRRFRSAHTAAEQTKEAISRGE
TLPSEERFDSNCITPGTPFMVRLQSELEYFVADKMSNDPLWTKVQVILSGHQVPGEGEHK
IMDYIRYMKSRPGYNPHTRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFGRKAKKETSV
DETKFYLLHLSLMRDYLGLEFQELKETLPFEYNLESIIDDWVLMGFLVGNDFIPHLPDLH
ISKGALPILYRVYMDVLPKVEGYLNEQGTLNLKRFQKFMETLANFDYDQFRDTYADIKFL
EGKRAANTTSSNKVNNDPAYKDELAALIKDTDRILLSDDDDEDEFEETEDESIMAEFNLH
KENYYKNKLDYNVVTDDVMRSQAEGYIRALQWNLNYYYNGCCSWAWYYPHHYAPYISDXK
GFENLKIDFDLGQPFLPFEQLLAVLPSLSKELLPKPFQDLMTEEASPIRLYYPEKFETDL
NGKQHEWEAVVLIPFIDEEMLIKSIKMVEHKLTADEKNRNTHGPMHLFKYTKKNLGTGSI
SRYFPSIEDNHAEKIAIYREEIFVEKRDLVKGLCPGLQMDVYHVGFPSLHLIPITAQLQR
RNVKVFQSPSLGENMIIKIENKDENVIESIQHIAKELLGNTLYVNWPHLVEIKVTAVSNT
TVKLSFDENEQLIIREMSETDAQDFNRLAHDIAKLFITTRGIEIGKTHILLHGQTLKGTK
YVPRQDGSGVDLIKIWNENSTAIAYQTSVPGLEVIDPSLKENYFSLEEYFPLGSKVFVLD
APFYGCQADVLGGFISSRVKINIILEPEPYFHDLKEHLESISTELFYANTAASKLSISSH
LLAKITGTIFLSVETYEDRNEKKMNIGMNLKSNKRNEEVVGFTKKIDNVWMYSQKTIDLL
GEYIQKFPELINVLLNTESSKDSFKSEDMFPDPSTRKQKLDDLKKWISEIRSLTKDKQTC
GSMEPSKVAALEKYMDZFIAENSKHKKTMTLSVKSQNLFKPITKLDKLKADEGADTRVLD
RVVCIRSSYQVPLGFKGTVVSISKSNIDTEVVYSVIFDKKFPNSVSFGGSTNRGYKLCRM
SFINLSHAIRNGLYKPLSVKKTVNQTHNPEKQNTQLSIWEHLQSNSNGSEIKLKSQEEKF
TLAPKESWRRQQKKESLSLNKINRNLQMPLETPNDGQHINNNSIKVQLNADACEFKTIAL
KKMLKIQPEVTFVPTQNNENRPEYHSNKPVNCLPETSLHELKTVELQCSNYNTNEQVSEN
VIPKLNSSMETIVQEKTFMVLALEKYYVQKGYNLPKYSFINLVDDNGFKMYCAEVILPNG
VTIRGEPKHSYIEASEEVASRALVIVQQMDANKNNEHSTKNKPPKSDRRAVFSQPAPSNV
FMNWITSFQSQPSYQPSQQLQQQQQQPQQQQQHQQQLPQQSYPQVPQYFEHSSQQFRPRF
QQFPSGFSVPAQQSFQIPHPQQIYRPQNPISFPGQQQQFFNYQQELQYSKAVPVFTSLVN
PSQLPQPPVHWQLTNNNLLNNEFAMNTISNTYHQPQQNMNYQQYLPTTLNNMPMNEQYMS
SNRVMIPSPSSAFTSAASDQSMSNRKVKVAANFNFSQQ
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgggggtacccaagtttttccgttatatgagtgagcgatatccttgtctcagtgagctt
gttaaagactatcagattccagagtttgataatctctacttagatatgaatggtattatt
cacaattgttcgcatccaaatgacgatgatccgcattttcgtataacagaagagactatt
gttaaaaatatcttccactatttggaggtattatttcaaatgattcaaccacaaaaattg
ttcttcatggctattgatggtgttgctcctcgagcaaaaatgaatcaacaacgtggtcga
cgttttcgatcagcccatacagctgcagaacaaacgaaagaagcaatttctcgaggtgaa
acgttaccttcagaagagcgttttgattctaattgtattacaccaggtaccccatttatg
gtacgcttgcaaagtgagcttgaatattttgttgccgataaaatgtcgaacgatccatta
tggactaaggttcaagtgatattatctggacaccaagtacctggtgagggtgaacataaa
attatggattacattagatatatgaaatctcgccctggatataatcctcatacgagacat
tgtctctatggtttggatgctgatttaatcatgttgggactgtgtacacatgaaccatac
ttttcattgctcagagaagaggtcaaatttggacgtaaagctaaaaaagaaacatctgta
gatgaaacaaaattttatcttttacatttatcattaatgagagattatcttggattagaa
tttcaagaactcaaagagactttaccttttgaatataatttggagtctattattgatgat
tgggtgttgatgggttttctagttggtaatgattttattccacatctacctgatcttcac
atttcaaaaggagccttgcccatactatacagagtttatatggatgttcttcctaaagta
gaaggttatttgaatgaacaaggaacattaaatctaaaacggtttcaaaaatttatggaa
actttggccaattttgattatgatcaatttcgagatacttatgctgatataaaattctta
gaagggaaacgtgctgcaaatactacatcttctaataaagttaataacgatcctgcatac
aaagatgaattagctgcattaataaaagacacagatagaattctgttgagtgatgatgat
gatgaagatgagtttgaagaaactgaagatgaatccataatggctgaatttaatttacat
aaagaaaattattataaaaacaaacttgattacaatgttgtcacagatgatgtaatgcgt
tcacaagctgaaggttatatcagggcgttgcaatggaatctaaattattattataatggc
tgttgctcgtgggcttggtactatccacatcattatgctccatatatatctgacawwaag
ggttttgaaaatcttaaaatagactttgacttgggtcaaccatttttgccatttgaacag
ctgctagcagtgttgccatcacttagtaaagaactgctacctaaaccttttcaagattta
atgactgaagaagctagtccaataagattatattatcctgaaaaatttgaaactgatctt
aatggtaaacaacatgaatgggaagctgttgtactaatcccttttattgatgaagaaatg
ttgattaagtctataaaaatggttgaacataaattaactgctgatgaaaaaaatagaaat
actcatggtccaatgcatctttttaagtacacaaagaaaaatcttggtacaggttcgatt
tcaagatattttccatcaattgaagataatcatgcggagaaaatagctatttaccgtgaa
gagatttttgttgaaaaaagagatttagttaaaggtttatgtccaggcttacaaatggat
gtttatcatgttggatttccatctcttcatctcattcccattacagcacaattgcaaaga
cggaatgttaaagtatttcagtctcctagtttgggagaaaatatgattataaaaattgaa
aataaagatgaaaatgtcattgaaagtatacaacacattgctaaagaattgcttggaaat
acactctatgtaaattggcctcatcttgtagaaattaaggttacagctgtttcaaataca
acggtcaaattatcatttgatgagaatgaacaattgataataagagaaatgagtgaaaca
gatgcacaggactttaatcgacttgcgcacgacatcgctaaattgtttattacaacacgt
ggtattgagattggtaaaactcatatattattacatggtcaaactttaaaaggaaccaaa
tatgtgccaaggcaagatggaagtggagttgatcttataaaaatttggaatgaaaactca
acagcaattgcctatcaaacgtctgtgcctggcttagaagtaattgatcctagtttaaaa
gaaaattatttttctttggaagaatattttcctcttggaagtaaagtgtttgtccttgat
gctccattttatggttgccaagcagacgtacttggtggctttatatcttcaagagttaag
attaatataatacttgaaccagaaccttattttcacgatttgaaagaacaccttgaatct
atttctacagaacttttttatgctaatactgcagcatctaaactctcaatcagttcacat
ttacttgctaaaattactggaacaatatttttatcagttgagacttacgaagataggaat
gaaaaaaaaatgaatattggaatgaaccttaaatcaaataaacgaaatgaagaagttgtt
ggatttacaaaaaaaattgataatgtttggatgtattcacaaaaaacaatagatttgtta
ggtgagtatattcaaaaatttccagaattaataaatgtcttattaaatacggaaagttca
aaggattctttcaagtctgaagacatgtttccagatccaagtactagaaaacaaaaatta
gatgatctaaaaaaatggatcagtgaaattcgttcattaactaaagataaacagacttgt
gggtcaatggaaccatctaaagttgctgctttagaaaaatatatggatsaatttatcgca
gaaaactcaaaacacaaaaaaactatgacattaagtgtgaaatcacaaaatctttttaaa
ccaataactaagctagacaaattaaaagctgacgagggagctgacacacgagttttagac
cgtgtagtatgtattagatcttcatatcaagttcctcttggtttcaaaggcactgtagtc
agtatttctaaatcaaatattgatactgaagttgtatacagtgttatatttgataagaaa
tttccaaattctgtttcatttggtggttctactaatcgtgggtataaattgtgtagaatg
tcattcataaacttgtcacatgccattcgcaacgggttgtataaacctttaagtgtgaaa
aagacggtaaatcagactcataatccagagaaacagaacacccaattgagtatatgggaa
catttgcagtcaaatagtaatggatcagaaatcaaacttaaatcccaggaagaaaaattc
acattagctccaaaagaatcatggcgacgccaacaaaagaaagaatctctaagtctaaac
aagataaatagaaatcttcaaatgcctttggaaacacctaatgatggacaacatattaat
aataattccataaaagtacagttgaatgctgatgcctgtgaatttaaaactattgcatta
aagaaaatgttaaaaattcaaccagaagttacttttgttccaactcaaaacaatgaaaat
agaccagaatatcattctaataaaccagtcaattgtttaccagaaacttcacttcatgaa
ttaaaaacagtagaacttcaatgttctaattacaatactaatgaacaagttagtgaaaat
gtaattccaaaactcaacagctcaatggaaactatagttcaagaaaagacttttatggtt
ttggcattggaaaagtattatgtacagaaaggttataatcttcctaagtatagttttata
aatttagtagatgacaatggttttaaaatgtattgtgccgaagtgattttaccaaatggt
gttacaatacgaggagaaccaaaacattcatatattgaggcatctgaagaagttgcttct
cgtgctttggttattgttcaacaaatggatgctaacaaaaataatgaacactctactaag
aataagccaccaaaatcagatcgaagagctgtgttttctcaaccagcaccatcaaatgtg
tttatgaattggataacttctttccagtctcaaccttcatatcagccatctcaacagtta
caacagcagcagcagcaaccacaacaacaacaacaacatcagcagcagctaccccaacag
tcatatccacaagtgcctcaatattttgagcattcctcacaacagttccgaccacgattt
caacagtttccatctggattttcagttcctgctcaacagtcatttcagataccacatccg
caacaaatttatagaccgcagaatcctattagttttccaggtcaacagcaacagtttttc
aactatcagcaagaattacaatattccaaagcagtaccagttttcacaagtttggtaaat
ccatcacaattaccacaaccacctgttcattggcaactgaccaacaacaatttattaaat
aacgaattcgcaatgaatactatctcaaatacctaccatcaacctcaacaaaatatgaac
tatcaacaatatttgccaacaacgctgaataatatgccaatgaatgaacagtacatgtca
agtaacagagtaatgattccaagtccttcaagtgcatttacatcagcagctagtgaccag
tccatgtccaatcgtaaagtaaaagtagcggcaaattttaacttttcacaacaataa
DBGET
integrated database retrieval system
