Diuraphis noxia (Russian wheat aphid): 107170434
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Entry
107170434 CDS
T04900
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dnx
Diuraphis noxia (Russian wheat aphid)
Pathway
dnx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dnx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107170434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dnx03019
]
107170434
Enzymes [BR:
dnx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107170434
Messenger RNA biogenesis [BR:
dnx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107170434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
107170434
NCBI-ProteinID:
XP_015376038
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MDVVNENFYQLLPEIQQAIAECDFIAVDGEFTGLHNGTMVSIFDTAAQYYQKLRSNCMDF
LMVQFGLCAVKYNTEKKKFTYRAYNFYTFPKPMSRYAPDCRFLCQSSSMEFLSNHNXDFN
KLFKHGIPFLTVPDEQVLQNELLNRYKQNCLQXQTPSKVSECIPIPDNHKAEIETACEKV
KELLESETISEVIIAEKTNSFIRKLLYQEVYNRYSDTKVSLQSRIVEDIGNVMVAFKGRT
KLLMAQERMEREQIELEKAVGFSAVLKKIIASNKPIVGHNMTLDVCHMIHQFCLPLPSSY
SEFQAMVKTISYRFLDTKYISGTEPLKGFFSSTVLNDLKKSLAEQCQXYTDLEPEVPEVG
YSEDISKLHDAGYDAYLTSTVFVNLCNLYAKVKGIKEHISTDSSYLKQYENKLFMIRYNE
DPCLNLNGPEPQLQRSHVYHITFPPEWKTIDITNIFSPFTNVFIKYINDTSAWVALRDAS
QAKAMNKILPKLQALHKNIMLLPWSIYYKDTFTSNVPTATKRKISNCSSPPPKDNVDFSI
AEDSSDDGHTPEKVPRISRGRRVSKGGTISPILEGDESTELDADSSAVSNITCVDSKNNI
LDTPSYAQTLKTKKDADTTELKTIFPVASWD
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggtcaatgagaatttctatcagttgttgccggaaatccaacaggccattgct
gagtgtgatttcattgcggttgatggagaattcactggtcttcataatggtactatggtc
agcatatttgatactgctgctcaatactatcagaaactcagaagtaattgcatggacttc
ttgatggttcaatttggtttgtgtgctgtcaaatataatactgaaaagaaaaagtttaca
tacagggcgtataatttttatacatttcctaagcccatgagtcgatatgctccagattgc
cgattcttatgccagtcttccagcatggaatttcttagcaatcacaatttsgactttaac
aaactgtttaagcatggtattcctttccttactgtacccgatgaacaagtattgcaaaat
gaactgttaaatcgatataagcaaaattgtttacagkctcagacaccatcaaaagtctct
gaatgtatacctataccagacaatcataaagcagaaatagaaactgcttgtgaaaaggta
aaagaacttttagaaagtgaaacgatttctgaagtcatcatagcagagaaaaccaattct
tttatccgtaaacttctctatcaggaagtttataataggtattcagataccaaagtaagt
ttacagtcaagaatagtagaagatattggtaatgtaatggtagctttcaagggaagaaca
aaattgttaatggcacaggaaagaatggaacgggaacagatagagttagaaaaagctgtc
ggtttttcagcagtcttaaagaaaatcatagcttctaataaaccgattgttggccacaac
atgacattagatgtttgccatatgattcatcagttttgtttaccattgccatcaagctat
agtgaatttcaagctatggttaaaacaatatcatataggtttttggatacaaaatacata
agtggtacagaaccactcaaaggattcttcagttcaacagtactaaatgatttaaaaaag
tcactagctgaacagtgtcaawattatacagacttagaaccagaggttcctgaagttggt
tactctgaggacatatctaagttgcatgatgctggttatgatgcatatttgaccagtact
gtttttgtcaatctttgcaatttatatgccaaagtgaaaggtatcaaagaacacatttct
acagattcttcttacctcaagcaatatgaaaataagctctttatgattcgatataatgaa
gatccatgtttaaatttaaatggtcctgaacctcaacttcaaagaagccatgtttatcat
attacattcccgccagaatggaaaactattgatatcacaaacatatttagtccttttact
aatgtatttattaaatatataaatgatacatctgcttgggtggcattgagagatgcatct
caagcaaaagcaatgaataaaattttgccgaaattgcaagctcttcataaaaacattatg
ttgttaccttggtctatttactacaaagatacatttacatcgaatgtaccaactgcaact
aagaggaagattagcaattgttcatcaccacctcctaaggataatgtagatttttcgatt
gctgaagattcttctgatgatggccatacacctgaaaaagtaccacgtatttcaagggga
agaagagtttcaaaaggaggaactattagtccgatattagaaggagatgaatctactgaa
ttagatgctgattcttcagctgtatcaaatatcacttgtgtggattctaaaaataatatt
ttagatactccaagttatgctcaaaccttaaagacaaaaaaagatgctgatactacagaa
ttaaaaactatttttccagttgcttcgtgggattag
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