Diuraphis noxia (Russian wheat aphid): 107170924
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Entry
107170924 CDS
T04900
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dnx
Diuraphis noxia (Russian wheat aphid)
Pathway
dnx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dnx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107170924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dnx03019
]
107170924
03041 Spliceosome [BR:
dnx03041
]
107170924
Messenger RNA biogenesis [BR:
dnx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107170924
Spliceosome [BR:
dnx03041
]
Complex B
Other components
Prp19-related factors
107170924
Complex C
107170924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_12
TPR_15
TPR_2
Mad3_BUB1_I
NRDE-2
RPN7
TPR_10
DHR-2_Lobe_A
SNAP
MMR_HSR1_Xtn
PPR
Motif
Other DBs
NCBI-GeneID:
107170924
NCBI-ProteinID:
XP_015376632
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MRMELATSKSNVNVIQPDAVIFETYWLNKRDVEFEQDILRNPNSVKCWMRYIDNYKLGPY
KKVCVLYERALKQLPGSYKLWHCYLKIRRKYLKTTDNPDYEEVNNVYERALVYMNKMPRI
WIEFCTFMLKQPKLTVARRLFDRALRALPITQHXRIWPLYLKFIKESHDPEVAVKIYRRY
LKLFPEDSEDYIEYLTTSGRLDEAAIRLSEIVNNDSFVSKHGKSKHQLWNELCNLISKNP
LEIKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF
TQVYDAYAQFEELSLQKRMEVVHANQNSTEKDDCEIDLRMARLENLIERRLLLLNSVLLR
QNPHNVKEWLKRVQLYEGNDVQVINTFTEAVETVDPQKAVGRLHTLWVEFAKFYEKAKQL
EEARLVFKKAVLVSYIKVEHLASVWCEWVEMELRHDNFNEAMRLMRQATSIPSRKVAYHD
DTETVQIRLHKSLKLWSLYLDMEESFGTVKSTMACYDRVIDLRIATPQTIINYGLFLEEN
NYFEEMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGTKLERARDLFEECLEGCPPQF
AKCIYLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPKTREI
YMKALEVLTNNNARSMYLRFAELETKLGEIDRARAIYSHCSQICDPRVTEEFWQTWTSFE
VAHGNEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSVISVEPEKSGMKLLEEKALENKEK
PLEPIKFVLGSEQDRLPNIKVSNPDEIEFSDDEDEEDGDKENEXNDDEDMPTKKDVPAEL
FGNLGAFTEKNTE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgagaatggaactcgcaacgtcgaaaagcaacgtcaacgtgatacagccagatgctgtg
atattcgagacgtattggttaaataagagagatgttgaatttgaacaagatatactgaga
aatccaaattctgtgaagtgttggatgcggtacatagacaattacaaactgggcccgtac
aaaaaagtatgtgtactatacgaacgcgccttgaaacaactgccaggcagctacaaactg
tggcattgttacttgaaaatacgtcgaaagtatttaaaaactacagacaaccccgattac
gaagaagtgaacaatgtttacgagcgagcattggtgtacatgaacaagatgcctcgcatc
tggatagagttctgcacattcatgttgaaacagcctaaactcactgttgctcgtcgtctc
tttgatagggctcttagagctttaccaatcactcaacattmccgaatatggccattgtat
ttgaaattcataaaagaaagtcatgacccagaagttgctgttaaaatatataggagatat
ttaaaattatttccagaagattcggaagattatattgaatacttgaccacatctggacga
ctcgatgaagctgctattcgtttgtctgaaattgtaaacaatgacagttttgtatctaaa
catggtaaatctaaacatcaactttggaatgaactttgtaatttaatatcaaaaaatcct
ttagaaattaagtcattgaatgttgatgcaattatacgtagtggtttaagacgttacact
gaccagcttggtcatttgtggaactctttagctgattattatatacgtagtggattattt
gaaagagcaagagatatatatgaagaggctattcaaactgttacaacagttcgtgatttt
acccaagtgtatgatgcttatgcacaatttgaagagttaagtttacaaaaacgaatggaa
gttgttcatgctaatcaaaatagtactgagaaagatgattgtgaaattgatttacggatg
gcaagattggaaaacttgattgaaagaagattactacttttaaactcggtacttctaaga
caaaacccccacaatgttaaagaatggttaaagcgtgtacagctctatgaaggaaatgac
gttcaggtaataaatacttttactgaagctgtggagacagttgatcctcaaaaagctgtt
ggtagattacatacactttgggtggagtttgctaaattttatgaaaaagccaaacaactc
gaagaagcacgcytagtatttaaaaaggctgttttagtgtcatatattaaagttgagcat
ttagctagtgtctggtgtgaatgggtagaaatggaattgagacatgataactttaatgaa
gcaatgagactaatgcgacaagcaacttccataccttctcggaaagtagcctatcacgat
gacacagaaactgttcaaatacgattacataaatcrttaaaattatggtctttgtatttg
gatatggaagagagttttggaacggtcaaatcaacaatggcttgttatgatcgagttata
gatttaagaatcgcaactccacaaactattattaattatggattatttttagaagaaaat
aactattttgaagaaatgtttaaagcttatgaaaaaggtgtagcattattcaagtggcca
aatgttttygatatatggaatacatacttaacaaaatttttggaccgttacggtggtaca
aaacttgaacgggcacgtgatctttttgaggagtgtcttgaaggttgcccaccacaattt
gctaagtgtatttatttattgtatgcaaagcttgaagaaaaacatggcttaggcagaaga
gctatggctgtttacgaaagagccactgaagctgttctacctgaagagaagtttgaaatg
ttcaacatttacattaaaaaagcagcagaaatatctggtataccaaagactagagaaatt
tayatgaaagccttggaagttttgacaaataataatgcccgttcaatgtatctaagattt
gctgaacttgaaacaaaattaggtgaaattgatcgcgctcgagcaatatactcgcattgt
agtcaaatttgtgatcctagggtaactgaagaattttggcaaacttggacctcatttgaa
gtagctcatggtaatgaagatactctccgagaaatgctaagaattaaacgaagtgttcaa
gcaatgtataatattcaagtgaacatgatgtcagcacaaatgatgtctgttatttcggtt
gaaccagaaaagagtggaatgaagttgttagaagaaaaagcattagaaaataaagagaaa
ccattggaacctatcaaatttgttttgggtagtgagcaagatcgtttaccaaatataaaa
gtatcaaatccagatgaaattgaattcagtgacgatgaagatgaagaagatggtgacaaa
gaaaatgaagawaatgatgacgaagatatgcctactaaaaaagatgtgcctgctgagttr
tttggtaacttaggagcatttaccgaaaaaaataccgaataa
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