Diuraphis noxia (Russian wheat aphid): 107171119
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Entry
107171119 CDS
T04900
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dnx
Diuraphis noxia (Russian wheat aphid)
Brite
KEGG Orthology (KO) [BR:
dnx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dnx03016
]
107171119
Enzymes [BR:
dnx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107171119
Transfer RNA biogenesis [BR:
dnx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107171119
Prokaryotic type
tRNA splicing ligases
107171119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107171119
NCBI-ProteinID:
XP_015376836
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRPYNEELEYLEKKSPFKWEIKKGFQPNMRVEGVFYVNKFLEKLMLEELQNACRPGMI
GGFLPGVKQIANVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMDDPQSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNANDLEEALEMGMDWS
LREGYAWAEDKEHCEENGRMLNADSSKVSMRARKRGLPQLGTLGAGNHYAEIQVVDEVYD
KWAAKKMGIENVGQVCVMIHSGSRGFGHQVATDALLEMEKAMKRDQIEVNDRQLACARIN
SNEGQNYLKAMSAAANFAWVNRSSMTFLARQAFAKQFKLTPDDLDMHVIYDVSHNIAKME
QHYIDGKPKHLLVHRKGSTRAFPPYHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
NETFGSTCHGAGRALSRAKSRRNLDYNNVLEKLQQQGISIRVASPKLVMEEAPESYKNVT
DVVDTCHEAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagaccatataatgaagaactagaatatctagaaaagaaatctccatttaaa
tgggaaataaagaaaggatttcaaccaaatatgagagttgaaggagtgttctatgttaat
aaatttttagaaaaacttatgttggaagaattacaaaatgcatgtcgaccaggaatgatc
ggtggatttttacctggtgttaagcaaattgctaatgtggctgcattacctggcattgtt
cataaatctattggacttccagatgtacactctggttatggatttgctataggaaatatg
gctgcatttgatatggatgatcctcagtcgattgtttcgcctggtggtgttggatttgac
attaattgtggtgtacgattactccggacaaatttatttgaaaaagatgtccagcccatc
aaagaacaattagctcaaagcatgtttgatcatattccggttggggtaggatcaaaagga
atcataccaatgaatgcaaatgacttagaagaagcacttgaaatgggaatggattggtct
ctaagagaaggttatgcatgggctgaagacaaagaacattgtgaagaaaatggtagaatg
ttgaatgcagattcgtctaaagttagcatgagagcaagaaaacgaggtttacctcaatta
ggaacattaggagcaggtaatcactatgcagaaatacaagtagttgatgaagtttatgat
aaatgggcagcaaagaaaatgggaatagaaaatgttggtcaagtatgcgtaatgatacat
tctggaagtcgtggttttggacatcaagtggctacagatgctttactggaaatggaaaag
gctatgaaacgggaccaaattgaagttaacgacagacaattagcgtgtgcccgtatcaac
tctaatgaaggtcaaaactatttaaaagccatgtcagctgctgcaaattttgcrtgggtg
aatcgaagttcaatgacatttttagcacggcaagcttttgcaaaacaatttaaattaaca
ccagatgatttagatatgcatgtcatatatgatgtatctcataatattgcaaaaatggaa
caacattatattgatggaaaaccaaaacacctattagtgcacagaaaaggatctacaaga
gcatttccgccttatcatccacttattccagttgactaccaactaaccggtcaaccagta
ttaattggtggaactatgggtacctgttcatatgtattgactgggactgaacagggtatg
aatgaaacattyggatctacgtgccatggagctgggcgtgcactgtcaagagctaaatct
cgtaggaacttagactataataatgtattagaaaaattgcagcaacaaggaatttccatt
cgagtagcttcaccaaaattggtaatggaagaagctccagaatcatataaaaatgttact
gatgttgtggatacttgtcatgaggcaggaattagtaagaagactgtaaaattaagacca
attgctgttattaaaggataa
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