Desulfomicrobium orale: AXF15_01055
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Entry
AXF15_01055 CDS
T04289
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
doa
Desulfomicrobium orale
Pathway
doa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
doa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXF15_01055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
doa03021
]
AXF15_01055
03400 DNA repair and recombination proteins [BR:
doa03400
]
AXF15_01055
Enzymes [BR:
doa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXF15_01055
Transcription machinery [BR:
doa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXF15_01055
DNA repair and recombination proteins [BR:
doa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXF15_01055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMD91848
UniProt:
A0A109WAN4
LinkDB
All DBs
Position
complement(230137..234336)
Genome browser
AA seq
1399 aa
AA seq
DB search
MTLDDLFTQRGNASGAFNNQDLKAIGISVASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKSLPSKIGTLLDMTMADLEKVLYFDSYIILDPGETTLEKKQVISEEQYFQILDHYNDE
AITVGMGAESIKTLLQEIDLAQLRVELREESQSTRSQTKKKKLAKRLKIVEAFLESGNKP
EWMIMDVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIRN
EKRMLQESVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPYLKLHQCGLPKKMALELFKPFIYSKLEERGYASTIKSAKKMVEREEVAVWDILEE
VVREYPILLNRAPTLHRLGIQAFEPILVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPANGSPIIVPSQDIVLGLYFLTVDRPFEKGEGMIFSDPEEVV
CAFDAGHLDLHARIKVRIDGELVATTPGRIIVREIVPAEVPFDVYNREMSKKVIGRLVGE
AYRLAGTKATVILCDKLKDLGFEYSTRAGITVGVKDLNIPPAKSHILDRSYAEVSDIEQQ
YREGIITRSEKKNKVVDVWTKATNEVSEAMMRELRYDTVPNPHTGAPEVKHVLRWNASPA
AEERCNSFNSVFMMANSGARGNQDQIRQLAGMRGLMAKPSGEIIETPITTSFREGLTILQ
YFTSTHGARKGLADTALKTANSGYLTRRLVDVVQDVIVSEHDCKTVDGIELSHVTKGGEI
TVRLSERVLGRVAMYDVLDPETGEVFIPANAMINEDMVTEIERRGVSTITIRSALTCKSQ
HGVCALCYGRDLARGHLVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIEQSRYE
AMNKGRVVLSRVRTVTNSRGERMVLGKSGQLRIVDEQGVEREKYALPSGARLYFENGAEV
KKGDRLAEWDPFNEPFVTDVDGTVQLKDIIDGRTVQERIDEATGKSTLTVIEFRSSSFRP
GVAVCDADGTVKTRPDTGTQAFYTLPVGAILMVNDGDEIRAGDVIARKPRETTKTRDIVG
GLPRVAELFEVRKPKDQGILSEIDGVVSFGPDSKGKRKLIVEPEVGEAHTYLIPKGKHIS
VSEGDFVESGELLTEGTPDLHDLLKIKGEKYLAFYLVEGVQDVYRFQGVYINDKHIEIIV
RQMLKKLSVIDPGDTGFLMGEQVDKFRFLRANSKCVAAGLQPAVAEPLVLGITQASLSTE
SFISAASFQETTKVLTESALIGKKDYLYGLKENVIVGRLVNAGTGFRAYVENDILVPEQP
ESPDKFLEELEKDPFFIEQ
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgactcttgatgatctttttacgcaacggggcaacgcctccggcgcattcaataatcag
gatctgaaggccatcggcatcagcgtggcctcgccggaaaaaatccgggaatggtccttt
ggcgaggtcaaaaaaccggagactatcaactaccggacattcaagcccgagcgcgacggt
cttttctgcgccaagattttcggcccggtgaaggactacgagtgcaactgcggcaaatat
aaaagaatgaaacatcgcggcattgtctgcgagaaatgcggcgtggaagtcattgcttcc
aaggtccgccgcgagcgcatggggcacattgaactggccgctcccgtggcgcatatctgg
tttctgaaatccctgccttccaagatcggcactctcttggacatgaccatggccgacctg
gagaaggttctttatttcgattcctatatcattctggacccgggcgagaccacactggag
aagaagcaggtcatctccgaggagcagtactttcagattctggaccattacaatgacgag
gctatcactgtagggatgggcgctgagtccatcaagaccctcctgcaggagatcgatctg
gcccagctgcgggtggaactgcgtgaggaatcccagtccacccggtcccagaccaagaag
aagaagctggccaagcggctgaagattgtggaggcgtttctggagtccgggaacaagccg
gagtggatgatcatggacgtcatccccatcatcccgccggaactgcgtcctctggtgccg
ctggatggcggccggttcgccacttcagacctgaacgacctgtaccgccgggtcatcaac
cggaataaccgcctgaagcggctgctggagttgggcgcgccggacatcatcattcgcaac
gaaaagcgcatgcttcaggaatccgtggacgcgctgttcgacaacggacgccgcggccgg
gccatcaccggcaccaacggccgccctctgaagtccctttcggacatgatcaagggcaaa
cagggccggttccgccagaacctgctgggcaagcgcgtggattattcaggccgttcggtc
attgtcgtggggccgtacctgaagctgcaccagtgcggtttacccaagaagatggcgctg
gagctgttcaagccctttatctactccaagctcgaagagcgcgggtacgcgagcaccatc
aagagcgccaagaagatggtggagcgggaggaagtggctgtctgggatattctggaagaa
gtggtgcgagaatatcccatcctgctgaaccgcgcacccacgctgcaccggctgggtatt
caggcgttcgagcccattctggtggagggcaaggccatccgtctgcatccgctggtatgt
acggctttcaacgcggacttcgacggagaccagatggccgtgcacgtgccgctttctgtg
gaggcccagatcgagtgccgggtgctgatgatgtccaccaacaatatcctgtcgccggcc
aatggttcgcccattatcgtgccgtctcaggatattgtgcttggcctctattttctgact
gtggaccggccttttgaaaaaggcgaaggcatgatcttctccgatccggaagaagtcgtc
tgcgctttcgatgccgggcatctggatctgcatgccaggatcaaggtccgcattgacggg
gaactggtggccaccacgccggggcggatcatcgtccgggaaattgttccggcggaagtg
cccttcgacgtgtacaaccgggagatgagcaagaaggtcatcggtcggctggtgggcgaa
gcctaccgcctggcgggcaccaaggctacagtcatcctttgcgacaaattgaaggacctg
ggtttcgagtactccacccgggctggcatcaccgtcggggtgaaggatctgaatattccg
ccggccaagagccatattctggaccgctcctatgccgaggtgtcggatatcgagcagcag
taccgcgagggcatcatcacccgttccgagaagaagaacaaagtggtggatgtctggacc
aaggccaccaacgaagtctccgaagccatgatgcgcgaactcaggtacgacaccgtgccc
aacccgcatacgggagcgccggaggtaaagcatgtgctgcgctggaacgcgtccccggct
gcggaagagcggtgcaacagcttcaattccgtattcatgatggccaattccggcgcgcgc
ggaaaccaggaccagattcgtcagctcgcgggtatgcgtggcctcatggccaaaccgtcg
ggtgaaatcatcgaaacgcccatcaccacttctttccgtgaagggctgaccattctgcaa
tacttcacttccactcacggcgcccgcaaaggtctggcggatacggctctgaaaacggcc
aactccggatatctgacccggcgtctggtggacgtggtgcaggacgttatcgtcagcgaa
cacgactgcaagaccgtggacggcatcgaactgtcccatgtgaccaagggcggcgagatc
accgtgcgtctgagcgagcgggtgctcgggcgtgtggccatgtacgacgtgctcgaccct
gaaacgggcgaggttttcattcctgccaacgccatgatcaatgaagatatggtgacggag
atcgaacgccggggcgtgtcgaccatcaccatccgttcggccctgacctgcaaatcccag
cacggagtgtgcgctctgtgttatggccgggatctggcccgggggcacctggtcaatgtg
ggcgaggccgtgggcattatcgcggcccaatccatcggcgagccgggaacgcagctgacc
atgcggacgttccacatcggcggtacggcgtccaaggagatcgaacagagccgttacgag
gctatgaacaaaggccgggtggtactctcccgggtccgtaccgtgaccaacagccgcggc
gaaaggatggtgctgggcaagagcgggcagctgcgcattgtggatgaacagggcgtggaa
cgcgaaaagtatgccctgccttctggcgccaggctctatttcgagaatggagccgaggtg
aaaaaaggtgaccggctggccgaatgggatcccttcaacgagccctttgtgacggatgtg
gacggtacggttcaactcaaggatatcattgacggccgtaccgtgcaggaacggatcgac
gaggccacaggcaagtccaccctgacggtcatcgagttccgctcgtcgagcttccggccg
ggagttgccgtgtgcgatgccgacggcacggtcaaaaccaggcccgatacgggcacccag
gccttttatactctgcctgttggggccattcttatggtcaatgacggtgacgagatccgg
gctggggatgttatcgcccgtaaaccccgcgaaacgaccaagaccagggatatcgtcggc
ggtctgccccgtgtcgcggagttgttcgaggtacgtaaacccaaggaccaggggatcctg
tcggaaatcgacggagtggtcagtttcgggcccgactccaagggcaaacgcaagctgatt
gtggagcccgaggtgggtgaggcccacacctatcttattcccaagggcaagcatatcagc
gtcagcgaaggcgacttcgtcgagagcggcgaattgctgaccgaaggcacgccggatttg
cacgatcttttgaagatcaagggcgagaagtatctggccttttatctggtggagggggtg
caggacgtgtaccgcttccagggcgtgtacatcaatgacaagcacatcgagatcattgtc
cgccagatgctgaagaagctgtccgtcattgatccgggagatacgggattcctcatgggc
gagcaggtggacaagttccgtttcctgcgtgccaactccaagtgcgtggccgccgggttg
cagcccgccgtggctgagccgttggttctgggcatcacccaggcctccttgtccacggag
tcttttatttccgcggcctccttccaggagacgaccaaggtgctgacggagtcggccctt
atcggcaagaaagactatctctacgggttgaaggaaaatgtcattgtcgggcggctggtc
aacgcgggcacgggtttcagggcttatgtcgagaacgacattctggtgccggaacagcct
gaaagtccggataaatttctggaagaattggagaaagatccctttttcatcgaacagtag
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integrated database retrieval system
