Desulfomicrobium orale: AXF15_04500
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Entry
AXF15_04500 CDS
T04289
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
doa
Desulfomicrobium orale
Brite
KEGG Orthology (KO) [BR:
doa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
doa03016
]
AXF15_04500
Enzymes [BR:
doa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AXF15_04500
Transfer RNA biogenesis [BR:
doa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AXF15_04500
Prokaryotic type
tRNA splicing ligases
AXF15_04500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMD94003
UniProt:
A0A0X8JSZ5
LinkDB
All DBs
Position
998350..999729
Genome browser
AA seq
459 aa
AA seq
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MLNPAALGIPSGLESVALACARELAAEGMPGKALRRLFVRLVETPAFFTDHPVLGRLAAM
LQSRSAPGRNFSDPVPEPGHSAPWRAFGEGLDAGAREQMNHGCSLPVAVAGALMPDAHMG
YGLPIGGVLAVENAVIPYGVGMDIACRMRMTVYAEDPGMLHVRADDLAEALERETRFGVG
AAFHHPRNHPVMTEDWDFSPVTRKMKDTAWKQLGTSGSGNHFVEWGVLDGPRGLGELGPG
RYLALLSHSGSRGAGGEVARHYSALARAMRPGLPKGLAHLAWLGLDTDEGREYWAAMQLM
GRYSAANHALIHAAVSGSLGLCAAWSVENHHNFAWEEVHGGQRVIVHRKGATPAGAGVLG
VIPGTMIHPAFVVEGLGNPLSLESAAHGAGRAMSRQEAARRFRRRDMEEVLRRAGVRLLS
AGVDEAPMAYKDIRTVMAAQRELVRIRGTFTPRIVKMAG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ctgctgaatccggccgctctgggcattccttcaggccttgaatctgtggccctggcctgc
gcccgggagctggcagcggagggcatgcccggcaaggctttgcggcggctgttcgtccgg
cttgtggagactccggccttttttaccgatcatcccgttctgggccgcctggcggccatg
ctccagagccggtccgcgcccggcagaaatttttcggaccccgtgccggagccgggacat
tcggcgccgtggcgggcctttggcgaaggactggacgccggggcccgggaacagatgaat
cacggctgctcgcttcccgtggcagtggccggagccctcatgcccgacgcccatatgggt
tacggcctgcccatcggcggggtgctggccgtggaaaacgcggtcattccgtatggtgtg
ggcatggacattgcctgccgcatgaggatgaccgtgtacgccgaagaccccggcatgctt
catgtccgggccgacgatctggccgaggctctggagcgggagacgcgcttcggcgtgggt
gcggccttccatcatccccggaatcatccggtcatgaccgaggactgggatttttctccc
gtgacccggaaaatgaaggacacggcctggaagcagctcggcaccagcgggtcgggcaat
cattttgtggaatggggcgtactcgatggaccccgcgggctgggagaactcgggccgggc
agatatctggcgctgctctcacacagcggcagccggggtgcgggcggggaggtggccagg
cattattccgccctggcgcgggccatgcgccccggattgccgaagggtctggcccatctg
gcctggctcggcctggatacggatgagggccgggagtactgggccgccatgcagctcatg
ggtcgctacagcgcggccaaccacgccctcattcacgccgccgtatccggcagccttggg
ctttgcgcggcgtggagcgtggaaaaccaccacaatttcgcctgggaagaggttcatggc
gggcagcgcgtcatcgtgcaccgcaagggcgcgacaccggccggtgcgggcgttctgggc
gtcattccgggaaccatgatccatccggccttcgtcgtggaagggctgggcaatccgctg
tcgctggagtccgcggcccacggggccgggcgggccatgagccggcaggaggccgcccgg
cgtttccggcgcagggatatggaagaggttctgcgccgggccggagtacgccttctttcc
gccggagtggacgaggcgcccatggcctacaaggacatccgcaccgtcatggccgctcag
cgcgagctggtccgcatccggggcacgttcactccgcgtattgtgaaaatggcgggatag
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