Desulfomicrobium orale: AXF15_06665
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Entry
AXF15_06665 CDS
T04289
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
doa
Desulfomicrobium orale
Pathway
doa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF15_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doa03019
]
AXF15_06665
03009 Ribosome biogenesis [BR:
doa03009
]
AXF15_06665
Enzymes [BR:
doa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXF15_06665
Messenger RNA biogenesis [BR:
doa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF15_06665
Ribosome biogenesis [BR:
doa03009
]
Prokaryotic type
rRNA helicases
AXF15_06665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
DUF5724
CMS1
AAA_30
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AMD92816
UniProt:
A0A0X8JQ69
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All DBs
Position
1462122..1463711
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AA seq
529 aa
AA seq
DB search
MTTFAELGLSTLTIEALARKGFEEPTPIQIQAIPAVLSGEADIVAQAQTGTGKTAAFGLP
LLELLDQTSHSVQALVLTPTRELAIQVAEEINSLRGGRTISVTPIYGGQSMEIQLRNLRK
GVSVVVGTPGRVLDHLRRGSLDVSGIDFLVLDEADEMLNMGFLEDVREIMDQTAPDKRTM
LFSATMPAEILRIAKKYMGDYQVIQAVSGQLTTAQTDQIYFEVSAGDKFEALCRIIDMDE
DFYGLVFARTKVDADMVSQRLQERGYDADTLHGDISQSLREKILGKFKKRLITILVATDV
AARGIDVRDLTHVINYDLPHDPESYVHRVGRTGRAGKQGIAITFITPSEYRRLQFISKQA
KTDIRKARLPKVSELISMKKERIRAELQAIVATEPELEFLGMAQELLEQSKPRETLAALL
QYMFQEELDASNYKEINDASVMDRKGKTRLFVAQGRKDGLTPKRLLSFLDANCHIPSRKV
WDIQIMDTFSFVSLPFQEAEKVLSMFNRQGKEGTLVFTKAKGRPAPSRK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttcgccgaactgggcctttccaccctgaccattgaagctctggcccgcaag
ggtttcgaggagcccacgcccattcagatccaggccatccccgccgtgctgtcgggagag
gctgacatcgtggcccaggcccagacgggcacgggcaaaacggcggccttcgggctgcct
ctgctggaactgctggaccagacctcccactcggtgcaggcgctggtgctgactcccacc
cgggagctggccattcaggtggccgaggaaatcaactccctgcgcggcggccgcaccatc
agcgtgacgcccatctacggcggacaatccatggagatccagctgcgcaacctcaggaaa
ggcgtatccgtggtggtcggcactccgggccgggtgctggaccatctgcgccggggaagt
ctcgatgtctcgggcatcgactttctggttctggatgaagccgacgagatgctgaacatg
ggctttctggaggatgtgcgcgaaatcatggaccagacggccccggacaagcgcaccatg
cttttttccgcgaccatgcccgccgaaattctgcggatcgccaaaaaatacatgggcgac
tatcaggtcatccaggctgtttccggccagctcacgacagcccagacggatcagatctat
ttcgaggtttcggccggggacaagttcgaggccctgtgccggatcatcgacatggacgag
gatttctacggtctggtcttcgcccggaccaaggtcgacgcggacatggtttcacagcgc
ctgcaggagcgcggctacgacgccgacaccctgcacggcgacatttcccagagtctgcgc
gaaaagatcctgggtaaattcaaaaaacggctgatcaccatcctggtggccacggacgtg
gccgcacgcggcatcgacgtgcgcgacctgacccatgtcatcaattacgatctgccccac
gatccggaatcctacgtgcaccgcgtgggccgcacaggccgggcgggcaagcagggcatc
gccatcaccttcatcacgccctcggaataccgccgcctgcaattcatcagcaaacaggcc
aaaaccgacatccgcaaggcccggctgcccaaggtcagcgagctgatcagcatgaagaag
gaacgcatccgcgccgagttgcaggccattgtggccacggagccggagctggagtttctg
ggcatggcccaggaactgctggagcagagcaaaccccgcgaaactctggccgcgctgctg
caatacatgtttcaggaagagctggacgcctccaactacaaggaaatcaacgacgcctcg
gtcatggacagaaagggcaaaacccgcctgttcgtggcccaggggcgcaaggacggcctg
actccgaagcggctgctctcctttctggacgcgaactgtcacattccgtcccgcaaggtc
tgggacattcagatcatggacaccttttcctttgtctccctgcccttccaggaggcggaa
aaggttctctccatgttcaaccgccagggtaaggaaggaaccctggtgtttaccaaagcc
aaaggacggccggctccatccagaaaatga
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