Desulfomicrobium orale: AXF15_07840
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Entry
AXF15_07840 CDS
T04289
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
doa
Desulfomicrobium orale
Pathway
doa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
doa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXF15_07840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
doa03400
]
AXF15_07840
Enzymes [BR:
doa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF15_07840
DNA repair and recombination proteins [BR:
doa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXF15_07840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
DUF6511
DUF1611_N
Motif
Other DBs
NCBI-ProteinID:
AMD94057
UniProt:
A0A0X8JSK5
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All DBs
Position
1709622..1713095
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AA seq
1157 aa
AA seq
DB search
MPTAFLQKFLTGPDYQVRVFKSGPASQLRLAQHLLAKGRNVVLVLPSSAELPLYSSLASL
LASAEAELPFWERTWARFPQYAVEETPRRSSWPERWKALFTLSRPGRARGVLLPLENLLQ
KWPHPDILQHEYLHLGKGEEIIQDDLLETLINWGYRRVSMVTAVGEISLRGDILDVFAPG
YDLPLRMEFFGDTLERIGLFEPMSQRSRTELETVALLPVTGCIGAGTYREDARAMYDGWL
RLGELSRTARAALEEEDAPAGLPPAMYYPGAVGLDAWLPRDSVFIIAEAQDLRTKLEEAG
WAWQNHFREREWPRQGLVLTSGDARKIWEGSRRILCESLVMGVRGDGEELPEESVNGFED
LFWTPESRNRPWRALMQALPEWRRIYDQTLFCFHTEQSRRKFLQLAAQDQHVLKTEYSAS
ERGIFALVGSLGRGMRLPWARMQILPESVLQPGAPKAHKAAARAFRGLDTFDDLEAGALL
IHRDYGLCRFGGLHRIRFGSVANDYLLLQYEGEDRLYLPVDRLGQVQRYKGPEGATPALD
RLGGTAWTRARERTRQSVAKIARDLVEMYAFRKIAKGFTYHPLSELYWEFEAGFGFEATR
DQEKAIADVLADMERSEPMDRLVCGDVGFGKTEVALRAAFRAVVDGKQVALLCPTTVLAE
QHYQTFRQRMEPFSISVGLLSRFVPAAGQKRVIDAVRRGQVDVLIGTHRMLSKDVEFANL
SLLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPRDR
KPVETSLMERDAGELRPILERELARGGQVFWVYNRVQGLERVAEFVSSLAPQARVGMAHG
QMKAQDLEDTMHRFWHGELDILVCTAIVESGLDFPRANTLIVDQAQLFGLGQLYQLRGRV
GRSSEQAYAYFIIPDLDRLQETSRKRLKIILDMDYLGAGFKVAMEDLRLRGAGNILGEAQ
SGTMGKVGLDLFLEMLEEEVARLRGGKVETHIEPELNLGFQALIPEEYMPDGQERLQCYK
SLSSCREEAEILEIVDDLRDRFGSLPEALKTFVAVLMVKIDARRLGAVRVDLFEDRALMH
WDETRHSLDLEKLMTWVRERADSARLLPPAKLELRMAGQSSRAEAMRLLKDMLTDLRRRL
HGEDNPKIELDAALAQG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaccgcctttctacagaaatttctcaccggtccggactatcaggttcgcgtcttc
aaaagcggcccggcctcgcagttgcgtttggcccagcatctgctggcaaaaggcagaaac
gtggtgctggtgctgccctccagcgcggagctacctctttattcctccttggcttcgctt
ctggcttccgcggaagcggaactgccgttctgggagcggacctgggcgcgtttcccccag
tatgcggtggaggagactccacggcgttcatcctggcccgagcggtggaaagcgctgttt
accctgtcccggccgggccgggcgcgcggcgttctgctgcctctggaaaacctgctgcag
aaatggccgcatccggatattctccagcacgagtacctgcatctgggcaagggagaggag
atcattcaggacgacctgctggaaaccctgatcaactggggataccggcgcgtgtccatg
gtcacggccgtgggcgagatttccctgcgcggcgacattctggacgtgttcgctccaggc
tacgacctgcccctgcgcatggagttcttcggcgacactctggaacgtatcggccttttc
gagcccatgtcccagcgctccagaacggagctcgaaaccgtggctcttctgcccgttacg
ggctgcatcggagccggaacctaccgcgaggacgcccgcgccatgtacgatggctggctg
cggctgggggaactgtcccgtacggcccgcgcggctctggaagaggaggacgccccggcc
ggtctgccgcccgccatgtactatcccggtgcggtggggctcgacgcctggctgccccgg
gacagcgtattcatcatcgccgaggcccaggacctgcggaccaagttggaggaggcggga
tgggcttggcagaaccatttccgggagcgggaatggccccggcaggggcttgtgctcacc
tccggggacgcccgcaaaatctgggagggcagccgccggatactctgcgaaagtctggtc
atgggcgtgcgcggggacggagaggaactgcccgaagagagcgtgaacggcttcgaggac
ctgttctggacgcccgaaagccgcaacaggccctggcgggcgctcatgcaggcgttgccc
gaatggcggcggatttacgaccagacgcttttctgcttccacacggagcagtcccggcgg
aaatttctgcagctggcggctcaggatcagcacgttctgaagacggaatacagcgcttcg
gagcggggcatcttcgctctggtcggctcgctgggccggggcatgcgcctgccgtgggca
cggatgcagattctgccggaatccgtgcttcagcccggtgcgcccaaggctcacaaggcg
gccgcccgtgcctttcgcggtctggacaccttcgacgatctggaggccggggccctgctc
attcaccgcgattacggcctgtgccggttcgggggactgcaccggatccgtttcggatcc
gtggccaatgactatctgcttcttcagtacgagggggaggaccgcctttacctgcctgtg
gacagactggggcaggtgcagcgctacaagggacccgagggcgcgaccccggctctggac
agactgggcggaacggcctggacgagggccagggagcggacccggcagtccgtggccaag
atcgcccgcgatctggtggaaatgtacgccttccgcaagatcgccaagggtttcacctat
catcccctgtcggaactgtactgggaattcgaggccgggttcggcttcgaggccacgcgg
gatcaggagaaggccattgccgacgtgctggccgacatggaacgctccgaacccatggac
cgtctggtctgcggcgacgtgggcttcggcaagaccgaagtggcgctgcgggccgccttc
cgggcggtggtggatggcaagcaggtggcgcttttgtgtcccaccacggtgctggcggag
cagcattatcagactttccggcagcgcatggagcctttttccatcagcgtgggccttttg
agccgctttgtgcccgcggcgggccagaagcgggtgatcgacgccgtgcgccgggggcag
gtggacgtgctcatcggcacccaccggatgctctccaaggacgtggagttcgccaatctg
tccctgctcattctggacgaggagcagcgcttcggcgtcaaacacaaggaacgcatcaag
aaaatgcgctccaccatcgacgtgctgaccctgaccgcgacgcccatcccccgcaccttg
cagttgtccctgtcaggcatccggggcctgagcgtcatcgaaaccccgcccagagacaga
aagcccgtggaaacctcccttatggagcgcgatgcaggagagctccgccccattctggag
cgggaactggcccgcggcgggcaggtattctgggtgtataaccgcgtgcagggactggag
cgggtggcggaattcgtttcctctctggccccccaggcgcgggtgggcatggctcacggc
cagatgaaggctcaggatctggaagacaccatgcacaggttctggcacggcgagctggac
attctggtgtgcacggccatcgtggagtcggggctcgattttccccgggccaacacgctc
atcgtggaccaggcccagcttttcggtctggggcagctctatcagctgcgcggccgggtg
gggcgctccagcgaacaggcctacgcctatttcatcattccggatctggaccgcctgcag
gaaacttcccgcaagcggctgaaaatcattctggacatggattatctgggcgcgggcttc
aaggtggccatggaagatctgcgcctgcgcggcgcgggcaacattctgggcgaggcccag
tccggcaccatgggcaaggtcggtctcgacctttttctggagatgctggaagaggaagtg
gccagactgcgcggcggcaaggtggagacgcacatcgagccggaactcaatctcggcttt
caggccctcatccccgaggaatacatgcccgacggccaggaacggctgcaatgctacaaa
agtctgtcctcctgccgggaagaggcggaaatcctggaaatcgtggatgatctccgggac
cgcttcggctccctgcccgaggccctgaagacattcgtggccgtactcatggtcaagatc
gacgcgcggcggctgggcgcagtgcgggtggatctgttcgaggaccgggccctcatgcac
tgggacgagaccaggcacagcctggaccttgagaagctgatgacctgggtccgggaacgg
gccgattcggcccggctccttcctccggctaaactggaactgcgcatggccggacagtct
tcgcgggcggaagccatgcgtctgctcaaggacatgctgacggatctgcgccgcaggctg
cacggtgaagacaatcccaagattgaactggacgcggctctggctcaagggtag
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