Dolichospermum sp. DL01: HEQ26_00765
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Entry
HEQ26_00765 CDS
T10442
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
doc Dolichospermum sp. DL01
Pathway
doc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
doc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HEQ26_00765 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
doc03400
]
HEQ26_00765 (mfd)
Enzymes [BR:
doc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEQ26_00765 (mfd)
DNA repair and recombination proteins [BR:
doc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HEQ26_00765 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSV61506
LinkDB
All DBs
Position
154071..157586
Genome browser
AA seq
1171 aa
AA seq
DB search
MAFSSIVRALARSPLTAELITKLNKQRELRLNGISRLPKGLVASALANYEDQDLCVVCAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNGQLQKQKT
AIIATVGALQPHLPPPEAFKSFCVTLEKGMEFDLDGFGEKITLLGYERVPLVETEGQWSR
RGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSALDKVEKITLTPTSFAPIISDA
LKDLPNVETFQGISSELGTLEGSRRFLGLAFAKPASLLDYLSENTLVAIDELEQCYAHSD
RWVENANSQWSVGAKHLEDHFLQPPIIYLPNASPVQLSVALPKIHRNFDECIAEIGNFRK
LYLSELSEENSGLNLASRPLPVTPHQFAKLGETIRKERERNFAVWILSAQPSRSVSLLQE
HDCPAQFIPNPRDYQAIDKLQINHIPIALKYSGLAELEGCILPSYRLVIVTDREFYGQHS
LANFGYVRKRRQATSKQVDPNKLRQGDYVVHRSHGIGKFVKLESLIINDETRDYLVVQYA
DGLLRVAADQVGSLSRFRTGGDKAPELHKMSGKAWENTKSKVRKAIKKLAVDLLKLYAAR
SQQQGFSYPHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKT
EVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPINVGLLNRFRSAEEKRNI
QKRLATGELDIVVGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLS
ATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYV
VPRVDGIEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGL
DIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQE
FTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKVE
DTQIDLNLTAFIPATYITDLDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVPASQL
LRVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAEKLTPTMKARFVYSPGKVT
ARGLGVFKADQQLQTLIDTFVKMQGAIPETT
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggccttttcttctattgtgcgtgctttggcgcgatcgcctcttaccgccgaactaatt
accaaactcaacaaacaacgggaattgcggttaaatgggatttctcgtctccccaaggga
ctggtagcttcagcattagcaaactatgaagatcaggatttgtgtgtggtctgtgccact
ctagaggaagctggccgggttttcgcccaaatggaagcaatgggctggaaaactgtgcat
ttttacccaacgtctgaagcttctccctatgaaccttttgaccctgaaaatgagttaagt
tggggtcaaatgcaggttttagcggatttggtaaatggtcagttgcaaaagcaaaaaact
gccataattgccactgtgggggcattacaaccacatttgccacctccggaagcgtttaaa
tcattttgtgtaaccttggaaaaagggatggaatttgatttagatgggtttggggaaaaa
atcactcttttgggatatgaacgagttcctctggtggaaactgagggacaatggagtaga
cggggggatattgtggatgtgtttccggtgtcctcagagttgcctgtgcgcttggaatgg
tttggcgacgaaattgaacaaattcgagaatttgaccccgctacccaacgttctgccttg
gataaggtggaaaaaattactctcacccctacaagttttgcacctattatttcagatgca
ctgaaagatttaccaaatgtagagacgttccagggaatttcttcagagttaggaacatta
gaaggaagtcggcggtttttggggttggcttttgcaaaacccgcttcattattagattat
ttatctgaaaatactcttgttgccattgatgaactagaacaatgttatgctcatagcgat
cgctgggtggaaaatgctaatagtcagtggtcagtaggggcgaaacatttagaagaccat
tttttgcaaccaccaataatttatcttccaaatgcttcgcccgtacagttgtcagttgca
ttaccgaaaattcatcgaaattttgatgagtgtatagcggaaattggcaattttagaaag
ttatatttatcggaattatcagaagaaaatagtggactgaatttagctagtagaccttta
cctgttacacctcatcaatttgcaaaattaggggaaacaattagaaaagaacgcgaacgc
aattttgcagtttggatactttcggctcaaccttcccgttctgtttctcttctgcaagaa
catgattgtcccgcgcagtttattcccaatcctcgtgattatcaagctattgataaactg
caaattaatcatattccaattgctcttaaatattccggtttagcagaattagaaggttgt
attttgccttcttatcggttggttattgtcaccgatagagaattttatggacaacattcc
ttagctaattttggctatgtccgcaaacgtcgtcaagcgacatctaaacaagttgatcct
aacaaattacgtcagggagattatgtagttcatcgtagtcatggaattggtaaatttgtc
aaattagaaagtctgataattaatgatgaaacccgtgattatttagttgtgcaatatgca
gatggtttgttaagagttgcggctgaccaagttggttctttatctcgtttccgcactggt
ggagataaagccccagaattacataaaatgagcggaaaagcttgggaaaatacgaagagt
aaagttcgcaaagccattaagaaattagcggtagatttattaaaattgtatgcagcccgt
tctcaacaacaaggtttttcctatcctcatgatatgccttggcaagaagaaatggaagat
tctttcccttaccaacctaccacagatcaactcaaagcggtacaagatgtgaaacgggat
atggaaagtgaaagaccgatggataggttagtatgtggagatgtgggttttgggaaaaca
gaagtggcaattcgggcgatttttaaagctgttaccgcaggaaagcaagttgcactttta
gccccaacaacaattttaactcaacaacattatcacacaattaaagaacgttttgcccct
tatcctataaatgtgggtttactgaatcggtttcgcagtgcggaagaaaaacgtaatatt
caaaaacgactggctacgggagaattagatatagttgtggggacgcatcaattattaggt
aaaagtgtccaatttaaagatctaggacttttagtaattgacgaagaacaaagatttgga
gttaatcaaaaggaaaaaatcaaaagcttaaaaactcaagttgatgttttaactctttct
gcaactcccattcccagaaccttatatatgtcattgtcgggaattcgggaaatgagttta
attaccacaccacctcccaccagaagaccaattcaaacccatctttcaccgctcaactcc
gatgttattagaagtgcaattcgacaagaattagatcgaggtggacaagtattttatgta
gttccgcgagtagacggaattgaagaaaccacgacaaaattgcgggaaatggttcctgga
ggcagatttgcgatcgctcatggtcaaatggacgaaagcgagttagaatcaactatgctg
acttttggcaataatgacgctgacattcttgtttgtacaacaattattgaatctggttta
gatattccgcgagttaacacaattttaattgaagatgctcaccgttttgggttatctcaa
ttatatcaattacggggtcgggtaggacgtgctggcattcaagctcacgcatggttattc
taccccaaacaaagagaattatccgatgccgccagacaaagattaagagcaattcaagaa
tttactcaactcggttctggatatcaattagcaatgcgagatatggaaattcgcggtgtg
ggaaatttgctaggtgcagaacaatctggtcaaatggatgtgattggctttgatttgtac
atggaaatgttagaagaagcaattcgagaaattagaggtcaagaaatacccaaagttgaa
gatacccaaattgaccttaatctcaccgcatttattccggcaacttacattactgacctt
gatcaaaaaatgagtgcttatcgggctgtagctacagtaaaatcaaaatatgaactcaaa
caaattgctgctgaatggactgatagatatgggactattccagttccagctagtcagtta
ttacgagttatggaattaaaacaattagccaaaaatctcggatttagtcgcattaaacca
gagaataaacagcacattgttttagaaacaccaatggaagaaccagcttggaatctctta
gcagaaaaactcactcccaccatgaaagcccggtttgtttattctcctgggaaggtaaca
gccagaggtttaggagtgtttaaagcagatcaacaattgcagactttaatagatactttt
gtaaaaatgcaaggggcaattcctgaaacgacttaa
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