Dokdonia sp. Dokd-P16: DCS32_00575
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Entry
DCS32_00575 CDS
T05432
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dod
Dokdonia sp. Dokd-P16
Pathway
dod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCS32_00575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dod03021
]
DCS32_00575
03019 Messenger RNA biogenesis [BR:
dod03019
]
DCS32_00575
Transcription machinery [BR:
dod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DCS32_00575
Messenger RNA biogenesis [BR:
dod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DCS32_00575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AWH72717
UniProt:
A0A2S1Q816
LinkDB
All DBs
Position
complement(133983..135755)
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AA seq
590 aa
AA seq
DB search
MFDISELKAKKLPELQEIAKGINVPKYRTLKKLDLVYRILDLQAADPKKIEAVVPKVKEA
AAQAPAPKTERKPREERKPRAPRPAKTAKDTKDAPAANTEEAKDAPAKGKSPVKKEAPAK
REPQAKREAVKREPAKGKGGDDTKTPQKRDNQKDTRNNDKRNSNDNRQSNDKRAPRDNNR
NSNTRANTPRNNRNQKDGNTHGNNGNKDSRNRYREPDYEFEGIIESEGVLDIMQDGYGFL
RSSDYNYLASPDDIYVSQSQIRLFGLKTGDTVLGVIRPPKEGEKYFPLIKVSKINGLNPN
IVRDRVSFEHLTPLFPTEKFNLADRQASISTRVMDMFAPIGKGQRGMIVSQPKTGKTMLL
KDVANAIAANHPEVYQIVLLIDERPEEVTDMQRNVNGEVVASTFDKEAHEHVKVANIVLE
KAKRLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIE
GGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRNIANRRIFPAIDLTSSSTRRD
DLLHSKDTTQRLWVLRKYLADMNPVEAMEFMSDRIKSTKNNEEFLISMNQ
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttcagaattaaaagcaaagaagcttcccgagcttcaagagattgcaaaa
gggattaatgttcctaaatacagaacattaaaaaagctagaccttgtttacagaatactt
gatttacaagcagcagacccaaaaaaaattgaggcagtagtgcctaaagtaaaggaagca
gctgcacaagctcctgctcctaagacagaacgtaagcctagagaagagcgtaaacctcgt
gctccacgtccagcaaaaactgcaaaagataccaaggatgctcctgcagcaaacactgag
gaagctaaagatgctcctgcaaaaggaaaatctcctgtaaaaaaggaagctcctgcaaaa
agagaacctcaagcaaaaagagaagcggtaaaacgtgagcctgcaaagggtaaaggtgga
gacgatacaaagacaccacaaaaacgagataatcaaaaagatactcgtaataacgataag
cgcaacagcaatgacaaccgtcaaagcaatgataagcgtgcacctcgcgataataatcgc
aactcaaatacacgtgctaatacgccacgcaataaccgtaatcaaaaagacggaaatacg
catggtaacaatggtaacaaggatagccgtaaccgttaccgcgagccagattatgaattt
gaaggaattatagagagtgaaggagttttagatattatgcaagatggctacggctttttg
cgtagttctgactacaattaccttgcatctccagatgatatttatgtatcacaatcacag
ataagactttttggtcttaaaactggtgatactgtattaggtgtaatacgccctccaaaa
gaaggagaaaagtatttccctcttattaaagtaagtaagattaatggtttgaaccctaac
atcgttagagatcgtgtttcttttgagcacttaaccccattattccctacagaaaagttt
aacctagcagatcgtcaagcgagtatatctactcgtgtgatggatatgtttgcacctata
ggtaaaggtcaacgtggtatgattgtatcacaacctaaaacgggtaaaaccatgttactt
aaggatgtggcaaatgctattgcagcaaatcatcctgaagtataccaaattgtacttctt
atagatgaacgtccagaagaagttacagacatgcaacgtaatgtaaatggagaggtggta
gcctctacatttgataaagaagcgcatgagcacgtaaaagttgcaaacattgttcttgaa
aaagcaaaacgtcttgtggagtgtggtcacgatgtagtaatacttctagactctatcaca
cgtctcgcacgtgcatataataccgtacagccagcatctggaaagattctttctggaggt
gtagatgcaaatgcattacacaagcctaagcgtttctttggagcagcacgtaacatagaa
ggaggtggatcacttaccattcttgctactgcacttacagacacaggttcaaaaatggac
gaagtaatctttgaagaattcaagggtacaggtaacatggagctacaactggatcgtaat
attgcaaaccgccgtattttcccagcgatcgatcttacttcttcatctacacgtcgtgat
gacttactacacagtaaagacaccacgcagcgtctatgggtattacgtaaataccttgca
gatatgaatccagtagaagcaatggagttcatgagtgatcgtattaagagcacaaaaaat
aacgaggaattcttgatttcaatgaatcaataa
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