Dokdonia sp. Dokd-P16: DCS32_01150
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Entry
DCS32_01150 CDS
T05432
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dod
Dokdonia sp. Dokd-P16
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dod03009
]
DCS32_01150
Enzymes [BR:
dod01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DCS32_01150
Ribosome biogenesis [BR:
dod03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DCS32_01150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
TRAM
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
N6_N4_Mtase
PrmA
Methyltransf_11
UPF0020
DUF6262
Methyltransf_37
Methyltransf_ANTKMT
PCMT
FtsJ
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
AWH72817
LinkDB
All DBs
Position
257715..259127
Genome browser
AA seq
470 aa
AA seq
DB search
MGRRKQNRQVFENITVTDAGAKGKAIGHAPDGKVIFINNAVPGDVVNVQTTKKRKAYYEG
TATEVLTLSRKRTQPQCEHFDACGGCKWQHMDYKFQLEYKQQEVENNLKRLGKIELPELT
PIAGSSEQYFYRNKMEFGFSDSKWLTLEQIKSDEVIEDRNALGFHIAGMWDKILDIDKCH
LQRDPSNAIRNGIKEFATANNMAFYNARNQDGLLRTLMIRTSSNGELMVLIQFFKEETEN
RELLLNYIKDTWPEITSLLYVINSKGNDTIYDQEVICFSGRDHIFEEMEGLKFKINAKSF
YQTNSKQAYELYKITRDFAGLSGNELVYDLYTGTGTIAQFVAKKARKVIGVEAVLDAIEA
AKENAKLNGIENTEFFVGDMKKVFNTEFINAHGVPDIIITDPPRDGMHADVVQQIINISP
EKVVYVSCNSATQARDLALLDDTYKVTKVQPVDMFPQTHHVENVVLLEKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagacgtaaacaaaacagacaggtttttgagaatattactgtaacagatgcaggt
gcaaaaggtaaagctatcggtcacgcgccagatggaaaagtaattttcatcaataatgca
gtacctggtgatgttgtaaacgtacaaactacaaagaagcgtaaagcttattatgaggga
acggcaacggaggttttaacgctttcgcgaaagcgtactcaacctcaatgtgagcatttt
gatgcatgtggtggctgtaaatggcaacacatggattacaagtttcaactagaatacaaa
cagcaagaggtagaaaacaacctaaaacgcttaggtaaaatagaacttcccgagcttaca
cctatcgctgggagctcagaacaatacttttatcgcaataaaatggagtttggcttttct
gactcaaaatggcttacacttgaacagataaaaagtgatgaagtcattgaagatagaaat
gccctaggcttccatatcgctggaatgtgggataaaatacttgatattgacaaatgtcac
ttacaacgtgatcctagtaatgccatacgtaatggtataaaagaatttgcaactgcaaat
aatatggcattttataatgctcgtaatcaagatggactccttcgtacactaatgatacgc
acatcatctaatggtgagttaatggtgttaattcaattctttaaggaagaaactgagaat
agagaattactccttaactatataaaagacacttggccagaaataacttcgctattatat
gtaataaatagtaaagggaacgatactatttatgatcaagaagttatatgcttctctgga
agagatcatatttttgaagaaatggaaggtcttaagtttaaaattaatgccaaatcattc
taccaaacaaattcaaaacaagcttacgaactttacaaaatcacgcgagactttgctgga
cttagtggtaatgaattagtgtatgacttatatactggaaccggtactattgctcagttt
gtagccaagaaagccagaaaagtgattggtgtagaagctgtactagatgcaattgaagct
gctaaagaaaatgcaaagcttaatggcattgagaatacagagttttttgtgggtgacatg
aagaaagtattcaatacagaatttataaatgcccatggcgttccagatattattatcaca
gatcctcctagagatggaatgcacgcagacgttgtacagcaaattataaacatatcacca
gaaaaagtggtgtatgtgagttgtaatagcgcaacacaagcacgtgatcttgcgttatta
gatgatacctacaaagtaactaaggttcaacctgtagatatgttcccgcagactcatcat
gttgagaatgtagtgttgcttgaaaagagataa
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