Dokdonia sp. Dokd-P16: DCS32_03020
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Entry
DCS32_03020 CDS
T05432
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
dod
Dokdonia sp. Dokd-P16
Pathway
dod02020
Two-component system
dod02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DCS32_03020 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DCS32_03020 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dod03021
]
DCS32_03020 (rpoN)
Transcription machinery [BR:
dod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DCS32_03020 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
CLZ
SF3b1
MarR
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AWH73170
LinkDB
All DBs
Position
654577..656022
Genome browser
AA seq
481 aa
AA seq
DB search
MLKQQLNFKLSQKLSPQQIQLMKLIQLPTQAFEQKIKQELEENPALDSGKEEVQDDFEEF
DNTDDFDEAPEVEINVDDYLSDDEIPEYRLSANNYSADDEDKQVPYASGTSFNQYLKTQL
NTVRISSEEREVAEFIIGSLDEAGYLRRPLADLMDDLAFTQNIYTSEDVIEKMLFKVQDL
DPAGVGARNLQECLVLQLDRKPATKSVSLAVDILEKSFDHFSKKHYKKLMAKFHITEEEL
KDAINEIEHLNPRPGGSYSSNTKIVEHVVPDFTIRIVDGELELSLNGRNAPELKVSRDYS
NMLKGYKESKERTKAQKDAVMFIKQKLDAAKWFIEAIIQRQQTLFVTMSSIMHYQEKYFL
TGDERNLRPMILKDIATEIGMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMTNDQGEEV
STREIKKILEMVIEEEDKRKPLTDDKLAAILKVKGYPIARRTVAKYREQLDLPVARLRKQ
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacagcaacttaattttaaactttcgcaaaagctttctccgcagcaaatccag
ctgatgaagcttatccaacttcctacgcaggcgtttgaacaaaaaatcaaacaagagctg
gaagaaaatcccgcgctcgatagcggcaaggaagaagttcaagatgattttgaagagttt
gacaatacagatgactttgatgaagcgccagaggttgaaattaatgtggatgattaccta
agtgatgatgaaatcccagagtatcgcctgagcgcaaataattatagtgcagatgatgag
gacaaacaagtcccttatgcttcaggaacatcatttaatcaatatctaaaaacacaactc
aataccgtaagaatatcttctgaagagcgcgaagtggccgaatttatcataggctctcta
gacgaagcaggatacctgagacgtccgctagcagatctcatggacgacctagcttttaca
caaaacatctacacctctgaagatgttatagaaaaaatgctttttaaagtacaagatctt
gatcctgcaggtgtgggcgcacgtaatttacaagaatgcctggtactacaactagacaga
aagccagctacaaaatctgtatcgctagccgttgatattcttgaaaagtcttttgaccat
tttagcaagaagcattacaaaaagctcatggctaagttccacatcacagaagaggaactt
aaagatgccattaatgagatagagcatcttaatccaaggccaggaggatcatactctagt
aacacaaaaatagtagagcacgttgttccagacttcaccatacgcatagtagatggcgaa
ctagaactctcactaaatggacgtaatgctccagaacttaaagtatctcgagattatagt
aacatgcttaaaggctataaagaatctaaggagcgtactaaagcacagaaagatgcagta
atgttcattaagcagaagcttgatgctgccaaatggtttatagaagccatcatacagcga
cagcaaacgctttttgtcactatgagtagcatcatgcattatcaagaaaaatacttcttg
actggcgatgagcgcaacttaaggcctatgatattgaaagatatcgctacagaaattgga
atggatgtatccaccgtttctcgggtagcaaatagtaaatatgtagacacaccttacggg
acaaaacttattaaagagttcttttctgagagcatgacaaatgatcaaggtgaagaagta
tctacacgtgagatcaaaaaaatcttagaaatggttatcgaggaagaagataagcgtaag
cctcttacagatgataaacttgcggccattttaaaagtaaaaggataccctatagcacgt
agaacggtagctaaatatcgcgagcaactagatcttccagtagcgagattacgtaaacag
atttaa
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