Dokdonia sp. Dokd-P16: DCS32_14350
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Entry
DCS32_14350 CDS
T05432
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dod
Dokdonia sp. Dokd-P16
Pathway
dod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCS32_14350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dod03019
]
DCS32_14350
03009 Ribosome biogenesis [BR:
dod03009
]
DCS32_14350
Enzymes [BR:
dod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCS32_14350
Messenger RNA biogenesis [BR:
dod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCS32_14350
Ribosome biogenesis [BR:
dod03009
]
Prokaryotic type
rRNA helicases
DCS32_14350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWH75301
UniProt:
A0A2S1QFC4
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All DBs
Position
3228996..3230930
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AA seq
644 aa
AA seq
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MTFDELGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL
LQNIDENSKTTQGLIIAPTRELCLQITNEMKLYSKHMKGVRVVAVYGGANIQEQAREISR
GAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTW
LFSATMPREVARIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTRDRYQALKRLSDANP
DIFAVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQMLVATDV
AARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQLEKIL
GKKFEQKTIPDGKEITQVQLFHLANSINTTEINNEIDAYLPEIEEVLKDNTKEELIKKVF
SVEFTRFFNYYKKSKDLNQNAVGAAKEQSGDSTRYFINVGSKDDFDWMKLKDFLKEELGL
GQDGVYRVDCKDAFSFFNTDTEHKDRILSHFENFELDGRRVSVEETQGGGGRSGGGGRSG
GGDRRRSGGGRSGGGDRRRGGDDGFRSSGRSGGGDRRRSGGGSSDRKRSDRKSSYGDDQG
GRSRSRSERPARSERSERSSSPRTPDNRSEGNKSPFSGKRRRRS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgaactaggcctaaatgcgcctttactccaggctattgccgatatggga
tttgaaaccccatcaaaaatccaagaagaagctatcccacaactactcgccgaagaccgc
gatatggttgctcttgcacaaacaggaacaggaaaaacagctgcctttggatttccatta
ttacaaaatatagatgaaaatagtaagactactcaaggtcttattatagctcctactcgc
gaactatgtctccagattacaaatgagatgaaactgtactcaaagcacatgaaaggtgtg
cgtgttgttgcagtttatggaggagcaaatatacaagaacaagctcgtgagatttctcgc
ggagcacaaattgtagtagctacaccaggacgtatgcaagatatgatgcgccgtcgcatg
gtagatattacaaaattgagctactgtgtacttgatgaagcagatgagatgcttaacatg
gggttctatgaggatattacaaacatcctagcagatacaccagaagataagcttacatgg
ctctttagtgcgacaatgcctagagaagttgcacgtatagcaaaggagtttatggtaaac
ccgttagaaataacggtaggacataaaaacgaaggagcaaagaacgtatctcatgagtac
tttgtagtacacacaagagatcgttaccaagcacttaaaagactttctgacgcaaatcca
gatatctttgcggttatcttttgtcgcacaaaacgtgatactcaaaaagttgccgagcaa
cttattgaagatggatacaacgcaggagcacttcacggagatttaagtcagaaccagcgt
gacctggtaatgaagagctttagaaatcgccagatacaaatgcttgttgcaacagatgtt
gctgctcgtggtattgacgtagatgatattactcacgtagtaaactatcaattacctgac
gagatagaaacctacacacaccgttctggtcgtactggtcgtgctggtaaaacaggtact
tctctggtaattgttactaaaagtgaaatgcgtaagatcaaacaacttgagaaaatctta
ggtaagaagtttgaacaaaaaaccattccagacggaaaggaaatcacgcaagtacagtta
tttcaccttgcaaatagcattaacacaacagagattaataacgagattgatgcttacctt
ccagaaatagaagaagtattaaaagacaacacgaaagaagagcttatcaaaaaagtattt
tctgtagagttcacacgtttctttaattactacaagaagtccaaagatcttaatcaaaat
gcagttggagcagctaaggagcaatctggtgactctactcgttactttataaatgtaggt
agcaaagatgattttgactggatgaaacttaaagacttcttaaaggaagaattaggatta
ggtcaagatggcgtataccgtgtagactgtaaagatgctttttcattctttaatacagat
actgagcacaaagatagaattttatctcactttgaaaactttgagctagatggtcgtcgt
gtaagcgttgaggaaactcaaggtggcggtggtcgcagtggtggcggaggtcgtagcggt
ggcggagatcgtcgtcgtagtggcggaggtcgcagcggtggtggtgatcgtcgtagaggt
ggtgatgatggatttagatctagtggtcgcagcggtggcggagatcgtcgtcgtagtggc
ggaggatcttcagatagaaaacgtagcgatcgtaaatcaagctatggagatgaccaagga
ggtcgctctagaagtagatcagaaagaccagcaaggtcggagagatcagaacgtagttca
tctccacgcacgccagataacaggtctgaaggaaacaagagcccattttctggcaaaaga
cgtcgcagaagctag
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