Denitratisoma oestradiolicum: DENOEST_0671
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Entry
DENOEST_0671 CDS
T06737
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
doe
Denitratisoma oestradiolicum
Pathway
doe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DENOEST_0671 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doe03019
]
DENOEST_0671 (deaD)
03009 Ribosome biogenesis [BR:
doe03009
]
DENOEST_0671 (deaD)
Enzymes [BR:
doe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DENOEST_0671 (deaD)
Messenger RNA biogenesis [BR:
doe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DENOEST_0671 (deaD)
Ribosome biogenesis [BR:
doe03009
]
Prokaryotic type
rRNA helicases
DENOEST_0671 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
DUF5892
Motif
Other DBs
NCBI-ProteinID:
CAB1367836
UniProt:
A0A6S6XPL9
LinkDB
All DBs
Position
I:671156..673225
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AA seq
689 aa
AA seq
DB search
MSAIERFDQLGLSPSLLQGLEALGYETPSPIQAACIPRLLAGHDILGEAQTGTGKTAAFA
LPLLAQLDLAQRRPQALILTPTRELAIQVAEALQSYAHFMPGFHVLPVYGGQSMVVQLRA
LDRGAHVIVGTPGRVMDHLERKSLNLEGLKTLVLDEADEMLRMGFIDDVEWILEHTPSTR
QTALFSATMPEAIRRVARTHLREPQEVKIKSATSTVTAIRQRYWQVAGNKLDALTRILEV
EENFDAALIFVRTKLATVELAEKLEARGYAAAALSGDLQQAQRERVIEQLKNKTLDIVVA
TDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGRAGTAILFIAPREKRMLRVIE
QATRQPIEPMQLPSMEDVVDRRVSQFKRQVVEVLGAGNLGFFEDVVHQIEREQNLDTMEI
AAALAWLVQKDRPLQMVPAHAAEPGRRESEARSTREERPAFQQERPAFQKERPAYRDASP
APRAERPARPSSGARNGLARYRIEVGRNHGVTPKNIVGAIANEANIESRYIGQIDLFDEF
STVELPDTLSADVLGVLKRVRVQGRPLEIVLDHGDQAASRPPRKPWAGDERPARPSFSKG
DHDQPRREGGFGKPPRSGGFDQPRREGGFAKPSKEGGFGKPFKDGAHKPHKDGAPAKPFK
EGGFSKPRREAGADAPRKPGVVHKGKRHS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccatcgaacgctttgaccagttgggtctttctccttccctattgcagggcctt
gaagccctcggctacgagacgccctcgccgatccaggcggcctgcattccccgactgctg
gccggccatgacattctgggcgaggcccagactggcaccggcaagaccgcggctttcgcc
ctgcctctgctggcgcagctcgacctggcccagcggcggccccaggcactgatcctcacc
cccacccgtgaactggcgatccaggtggcggaagccctgcaaagctacgcccacttcatg
cccggcttccatgtgctgccggtgtatggcggccagagcatggtggtgcagttgcgtgct
ctggaccggggcgcccatgtgatcgtcggcaccccgggacgggtgatggatcacctggag
cgcaagagcctcaacctggaaggcttgaagaccctggtgctggacgaggccgacgagatg
ctgcggatgggcttcatcgatgatgtggaatggatactcgaacacacgcccagcacccgc
cagaccgccctgttctccgccaccatgcccgaggccatccggcgcgtggcccgcactcat
ctgcgggagccccaggaggtgaagatcaagtcggccacttccacggtcaccgccatccgc
cagcgttactggcaggtggcgggcaacaagctcgatgccctgacccgcattctggaagtg
gaggagaatttcgacgccgctctcatcttcgtgcgcaccaagctcgccaccgtggagctg
gcggagaagctggaagcacggggctatgccgccgcggccctgagcggcgacctgcagcag
gctcagcgtgagcgggtgatcgaacaattgaagaacaagaccctggacatcgtggtggcc
accgacgtggccgcgcgaggcatcgacgtgccccgcgtcagtcatgtgatcaactacgac
attccctacgacaccgaggcctacgtgcatcgcatcggccgcaccggccgggccggccgc
gccggcaccgccatcctgttcatcgccccccgggaaaagcgcatgttgcgggtgatcgaa
caggccacccgccagcccatcgagcccatgcagttgcccagcatggaggacgtggtggac
cgccgcgtgtcccagttcaagcgtcaggtggtggaggtgctgggggcagggaacctgggc
tttttcgaggatgtggtgcatcagatcgagcgggagcagaacctggacaccatggagatc
gccgccgccctggcctggctggtgcagaaggaccggcccctgcaaatggtgcccgcgcac
gctgcggagcccggccggcgcgagtcggaagcccgttccacaagggaggaacgtcccgca
tttcaacaggaacgtcccgcatttcaaaaggagcgtccggcctaccgggatgcgtcgccg
gcgccccgtgccgaacgtcccgcccggccgtcttccggggcacggaacggcctggcacgc
tatcgcatcgaggtgggccgcaaccacggcgtcacgcccaagaacatcgtcggcgccatc
gccaacgaagccaatatcgaaagccgctacatcggccagatcgacctgttcgacgagttc
agcaccgtggaactgccggacacgctctccgcggatgtcctgggggtgctgaagcgggtg
cgggttcaggggcggcccctggagatcgttctggatcatggcgaccaggccgccagccgt
ccgccccgcaaaccctgggcaggagacgagcgcccggctcgtccttccttctccaagggg
gaccatgaccagccccgccgcgaaggcggctttggcaaaccgccccgtagcgggggcttt
gatcagccccgacgtgagggaggcttcgccaaaccgtccaaggagggcggtttcggcaag
cccttcaaggacggtgcgcacaagccccacaaggatggcgctcccgccaaacccttcaag
gaaggcggcttttccaagccccgccgcgaagccggtgccgacgccccacgcaagcccggg
gtggtgcataagggcaagcgccacagttaa
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