Denitratisoma oestradiolicum: DENOEST_0729
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Entry
DENOEST_0729 CDS
T06737
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
doe
Denitratisoma oestradiolicum
Pathway
doe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DENOEST_0729 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
doe03021
]
DENOEST_0729 (rho)
03019 Messenger RNA biogenesis [BR:
doe03019
]
DENOEST_0729 (rho)
Transcription machinery [BR:
doe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DENOEST_0729 (rho)
Messenger RNA biogenesis [BR:
doe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DENOEST_0729 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
AAA
Mor
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAB1367894
UniProt:
A0A6S6YJH1
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All DBs
Position
I:complement(724812..726071)
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AA seq
419 aa
AA seq
DB search
MHLSELKALHVSQLLEMANANQIEAANRLRKHELIFAILKNQAKQGECIHGDGVLEILPD
GFGFLRSPDTSYLANTDDIYVSPSQIRRFNLHTGDTIEGEVRTPKDGERYFAMVKLDTIN
GQPPEACKNKILFENLTPLHPTEHLKLERDIKAEENTTSRVVDIIAPIGKGQRGLLVASP
KSGKTVMMQHIAHAITANHPDVSLIVLLIDERPEEVTEMTRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLTEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRF
FGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRVYPAINV
NRSGTRREELLLKPDVLQKMWILRKLLYNMDDLDAMEFLLDKIKATKNNGEFFDAMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttcggagctcaaagccctccacgtcagccaattgctggagatggccaatgcc
aaccagatcgaggccgcaaaccgtctgcgcaagcacgaactgattttcgctattctcaag
aaccaagccaagcagggcgaatgcattcacggcgacggtgtgcttgaaatcctgcctgac
ggcttcggcttcctgcgctcgccggacacctcctacctggccaacaccgacgacatctac
gtctctccctcccagattcgccgcttcaacctgcataccggcgataccatcgaaggggag
gttcgcactccgaaagatggcgaacgctacttcgccatggtcaagttggacaccatcaac
ggccaacccccggaagcgtgcaagaacaagatcctgtttgaaaacctgactccgctccac
cccaccgagcacctcaagctggagcgggacatcaaggccgaagagaacaccaccagccgg
gtggtggatatcatcgcccccattggcaagggacaacggggtctgctggtggcctcccca
aagtcgggcaagacggtcatgatgcagcacatcgcccacgccatcactgccaatcacccc
gatgtctctctgatcgtactgctgatcgacgagcgtcccgaggaagtgacggaaatgacc
cgtaccgtgcgtggtgaagtggtcgcctccaccttcgacgaacccgccacccgccacgtt
caggtcgccgagatggtgatcgagaaggccaagcgtctcaccgagcacaagaaagacgta
gtgatcctgctggactccatcacccgcctggcccgggcctacaacaccgtgcagccggcc
tccggcaaggtgctgaccggtggcgtggacgccaacgccttgcaaaaacccaagcgtttt
tttggcgcagcccgcaacctggaggaaggtggcagtctcaccatcattgccaccgccctg
atcgacaccggttcccgcatggacgacgtgatctatgaagaattcaagggcaccggcaac
atggaaatccacctggaccggcgcatggcggagaaacgggtctatccggccatcaacgtc
aatcgttccggcacccgcagagaggagttactgctcaagcccgacgtgctgcaaaaaatg
tggattttgcgcaaattgctttacaacatggacgatcttgatgcgatggaattcctcctg
gacaagatcaaggccaccaagaacaacggggaattcttcgacgccatgcggcggggctga
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