Denitratisoma oestradiolicum: DENOEST_0912
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Entry
DENOEST_0912 CDS
T06737
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
doe
Denitratisoma oestradiolicum
Pathway
doe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
doe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DENOEST_0912 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
doe03400
]
DENOEST_0912 (mfd)
Enzymes [BR:
doe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DENOEST_0912 (mfd)
DNA repair and recombination proteins [BR:
doe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DENOEST_0912 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
CTE_SPB4
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAB1368077
UniProt:
A0A6S6XVJ2
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All DBs
Position
I:complement(936586..940035)
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AA seq
1149 aa
AA seq
DB search
MPASPSPLLPQLSALSLPKPGARLDLPSLAGSADGLAIAQLAGAGRPQVVVTASPLDAQR
LQEEIAWFAPGLRVHLLPDWETLPYDGFSPHQDLISERLATLYAVTRGECDVLLVAASTA
LTRLAPPSFLAAHTFFIKKGDALHLDKLKEQLTVAGYQHVTQVVAAGEYSVRGGLVDLFP
MGTVLPFRIELFDEEVETLRTFDVDSQRTLYPVPEIRLLPAREFPLGEAGRNKFRARFRE
TFEGDASRIALYKDVSSGTLPAGIEYYLPLFFDQTATLFDYLPTDSILLLHRDVPAAIAE
FWVDTRSRHKMLGGDRSRPVLGPEELFLSDEQFFTATHAYPTLRLGARAEVTDVLAAALP
AVEVNRKADQPLAALKGFLQGFAGRVLLLAESAGRRETMAEYLAEHSLTPTPCADFASFI
ASGEAFMLGTGPASGGFVLAGAGIALITENELYAATARPRHKRDMARRANLEGWLRDLSE
LKIGDPVVHENHGIGRYLGLAHMDYGDGDTEFLHLEYAEGATLYVPVSQLQVISRYSGAD
PEAVELHRLGSGQWEKAKRKAAEQVRDTAAELLHLYAQRAARQGHRFEFKTHDLEAFADG
FGFEETPDQQAAIEAVVADMGSGKPMDRLVCGDVGFGKTEVAMRAAFVAVAGGKQVAVLC
PTTLLAEQHYQNFADRFADWPVKVAELSRFRSAKEQAEAIQGLGEGKIDILIGTHRLLQK
DVSFSRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGLSLEGLRDFSVI
ATAPQKRLAIKTFVAKWATSQVREACLREFKRGGQVYFLHNEVETIENMRERLAALLPEA
RIVVGHGQLPERELERVMREFTQQKHNLLLCSTIIETGIDNPHANTIIINRADRFGVAQL
HQLRGRVGRSHHQAYAYLLTDEHAKPTAQAQRRLEAIQAMEELGSGFFLAMHDLEIRGAG
EVLGENQSGEIQEIGFAMYTNMLNAAVKALKEGKAIPDLTQPLAITSEINLRTPALLPND
YCPDVHERLTLYKRLANCEDEETLRDLREELVDRFGELPPQGLALLETHRLRVLGRPLGV
SKLDAGPQSIQVQFVPNPPIDPMAVIQLIQSDRNFKLAGPDRLVWNRPTPTLQERASSIR
ELFGKLAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcctccccctccccgctgctgccgcagctctccgccctttccctgcccaagccc
ggcgctcgtcttgatctgccgtccctggcgggttccgccgatgggctggcgatcgctcaa
ctggcgggggccggacggccccaggtggtggtgacggcgagccccctggatgctcagcgg
ctccaggaggagatcgcctggtttgcgccggggctgcgggtacatttgctgccggactgg
gagaccctgccctatgacggtttctcgccccatcaggatctgatctccgaacgcctggcg
accctctacgcggtaactcgcggcgagtgcgatgtgctgctggtggcggcctccacggcc
ctgacgcggctggcgccgccgagcttcctggcggctcatacctttttcatcaagaagggt
gacgccctgcatctggacaagctgaaggagcagctcacggtggccggctaccagcatgtg
acccaggtggtggccgccggggaatacagtgtgcggggcgggctggtggatctgttcccc
atgggcaccgttctgcccttccgcatcgagctgttcgacgaggaagtggagacgctgcgc
accttcgacgtggattcccagcgcaccctttatccggtgccggaaattcgcctgctgccg
gcccgggagttccccctgggggaggcgggacgcaacaagttccgcgcccgcttccgcgag
accttcgagggagatgcttcccgcatagccctgtacaaggatgtttccagcggcaccctg
ccggcgggcatcgagtactacctgcccctgttcttcgaccagacggcgaccctgttcgac
tacctgcctaccgactccatcctgctgctgcaccgggatgtgccggccgccatcgccgag
ttctgggtggacacccgaagccgccacaagatgctggggggcgatcgttcccgcccggtg
ctggggccggaagaactgttcctcagcgacgagcagttcttcaccgcgacccatgcttac
cccaccttgcggctgggggcgcgggccgaggtcaccgatgtgttggccgctgccctgccg
gcggtggaggtcaaccgcaaggcggatcaacccctggcggcgttgaagggcttcctgcaa
ggctttgccggccgggtgctactgctggcggaatccgccggacggcgcgagaccatggcc
gaatacctggcggagcacagcctcacgccgacaccctgtgccgatttcgcgtccttcatc
gccagcggggaagccttcatgctgggtaccggcccagcgtccggaggcttcgtgctggca
ggtgccggcatcgccctgatcaccgagaacgagctctacgccgccacggcccggccgcgc
cacaagcgagatatggcccgccgcgccaacctggagggctggctgcgggatctgtcggaa
ttgaagatcggcgatcctgtggtgcacgagaatcacggcatcggccgctatctgggcctg
gcccacatggactacggcgacggcgacaccgagttcctgcacctggaatacgccgagggc
gccacgctgtacgtgcctgtctcccagttgcaggtgatttcccgctacagcggcgccgat
ccggaagcggtggaactgcatcgcctgggctcgggccagtgggaaaaggccaagagaaag
gccgccgaacaggtgcgggacaccgccgccgaattgttgcatctctacgcccagcgggcg
gcccgccagggccatcgtttcgagttcaagacccacgatctggaggccttcgccgacggc
ttcggcttcgaggaaacgcccgatcagcaggccgccatcgaggcggtggtggccgacatg
ggttccggcaaacccatggaccggctggtctgcggcgacgtgggcttcggcaagaccgag
gtggccatgcgcgccgccttcgtcgccgtggccggcggcaagcaggtggcggtgctgtgc
cccaccaccctgctggcggaacagcactaccagaacttcgccgaccgtttcgccgactgg
ccggtgaaggtggcggagctgtcccgtttccgctccgccaaggaacaggcggaagccatc
caggggctgggggaaggcaagatcgacatcctcatcggcacccatcgcctgctgcagaag
gacgtgagtttttcccgcctgggcctggtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaggccctgaagaccctgcgggccgaggtggatgtgctgaccctgacggcc
acgccgatcccccgtaccctgggcctgagcctggaggggctgagggacttctcggtaatc
gccaccgcgccccagaagcggctggccatcaagaccttcgtcgccaagtgggccaccagc
caggtacgggaagcctgcctgcgggagttcaagcgcggcggccaggtgtatttcctccac
aacgaagtggagaccatcgagaacatgcgggagcggctggcggcattgctgcccgaggcc
cgcatcgtggtgggccacggccagttgccggaacgggaactggagcgggtgatgcgggaa
ttcacccagcagaagcacaacctgctgttgtgctccaccatcatcgaaaccgggatcgac
aatccccacgccaacaccatcatcatcaaccgggccgaccgttttggcgtcgcccagttg
caccagttgcggggccgcgtcggccggagccaccaccaggcttacgcctatctgctcacc
gacgagcacgccaagcccacggcccaggcccagcgccggctggaggcgatccaggccatg
gaggaactgggctccggatttttcctcgccatgcacgacctggagatccgcggcgctggc
gaggtgctgggggaaaaccagagcggcgagatccaggaaatcggcttcgccatgtacacc
aacatgctgaacgccgcggtgaaggccctgaaggaaggcaaggccattccggacctgacc
cagcccctggccatcacctcggaaatcaacctgcgcaccccggccctgctgcccaacgat
tactgccccgatgtccatgagcgactgaccctctacaagcggctggccaactgtgaggac
gaggagactctgcgggacctgcgggaggaattggtggaccgctttggcgaactgccaccc
cagggcctggccctgctggagacccaccgcctgcgggttctcggccgccccctgggagtt
tcgaaactggatgcggggccccagtccatccaagtacaattcgtgcccaatccgcccatc
gatcccatggccgtcatccagctgatccagtcggatcgcaacttcaagctggcggggccg
gatcggctggtctggaaccgccccaccccgacgctccaggaacgggcgtcatccatccgc
gaactgttcggcaagcttgccgctgcctga
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