Denitratisoma oestradiolicum: DENOEST_2226
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Entry
DENOEST_2226 CDS
T06737
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
doe
Denitratisoma oestradiolicum
Pathway
doe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
doe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DENOEST_2226 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
doe03019
]
DENOEST_2226 (rne)
03009 Ribosome biogenesis [BR:
doe03009
]
DENOEST_2226 (rne)
Enzymes [BR:
doe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DENOEST_2226 (rne)
Messenger RNA biogenesis [BR:
doe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DENOEST_2226 (rne)
Ribosome biogenesis [BR:
doe03009
]
Prokaryotic type
rRNA processing factors
DENOEST_2226 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
CAB1369391
UniProt:
A0A6S6XYZ1
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All DBs
Position
I:2313415..2316207
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AA seq
930 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEVSRSYFKADMEPGRARIQDALKVGQELIVQVEKDERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRDIMDQLDVPGGMSLIARTAGIGRGLEELQ
WDLNYLLQLWGAIDGAAQGQPGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQ
QFMAHVMPGTVNRVKRYHDDVPLFSRFQIEHQIESAYSRQVTLPSGGAIVIDHTEALVSV
DVNSGRATKGSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESSKNQREVENR
LRDALHHDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCTGTGHIRSTESAALH
ILRILEEEAMKENTGAIHVQVPVDVGTFLLNEKRGDIARIEMRHRANLLIVPNRHLETPQ
HEIVRLRHDQLNLEDIALASYQMVGKPAEEGYLSPAAQNEVKPPKQEAVVKGITPEQPAP
IVEPRSAAPHTAERPAQPGILARIIAWFTGDKEQPQPVEEKKPQKTGRRDRNERGERGDR
NGRDRNGRGRQGREGREGREGQGNREERQPREGTERKERNERPKREEAQNEGAREPRRQR
GERGEKTGDKNERAEQTERPEKAERGERGERGERNERPPRQPRQPRAEQAEQQVIAEGSQ
IQGAATADDNEAQSERRRGRRGGRGRGERRNEETGARETMAPTADTAATGELVEPIAVAP
AVELTRETEAVATMTAEATPKEQASVTVEAVIPTPAVAPPPVAARAIEAPVAVAAAEPAA
PAQAEKIIEAELAPVAEVVAPAIEQQPAAAPAKREAEPIDLSQAGLVMIETVSSRPASAP
VAVATQPLGRKPKPVQVVADEPLQMVETRH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacgcaggccgaggaactccgcgtcgcgatcgttgat
ggtcagaaactgatcgacctcgacatcgaatcggccgcaaaggaacaacgcaagagcaat
atctacaaggcggtcatcacccgcatcgagcccagtctcgaagcggcgttcgttgactat
ggcgccgagcgccacggcttcctgcccttcaaggaagtctcccgatcctatttcaaggcc
gacatggagccgggccgcgcccgtatccaggacgccctgaaagtgggccaggaactgatc
gtccaggtcgagaaggacgagcgtggcaacaagggcgccgccctgaccaccttcgtttcc
ctggccggccgctatctggtgctgatgcccaacaacccccggggtggcggcgtttcccgt
cgcgtcgagggcgaggagcgccaggaactgcgggacatcatggaccagctcgatgtcccc
ggcggcatgagcctgatcgcccgcaccgcgggcatcggccgcggccttgaggaactccag
tgggacctgaactacctgctgcaactctggggtgccatcgacggtgccgctcagggccaa
cccggcgccttcctgatctaccaggaatccagcctggtgatccgcgccatccgcgactac
ttccagccggacatcggcgaaatcctgatcgacaccgacgacatctacgaacaggcccag
cagttcatggcccacgtgatgccgggcacggtgaatcgggtcaagcgctaccacgatgac
gtgcccctgttctcccgcttccagatcgagcaccagatcgaatctgcctactcccgccag
gtgaccctgccctccggcggcgccatcgtcatcgatcacacggaagccctagtttcggtg
gacgtgaactccggccgcgccaccaagggcagcgacatcgaggaaaccgccttccgcacc
aactgcgaggccgccgacgagatcgcccgccagttgcgcctgcgggatctgggcggcctg
atcgtgatcgacttcatcgacatggagagcagcaagaaccagcgcgaggtggaaaaccgc
ctgcgtgacgccctccatcacgaccgggcccgagtccagaccggcaagatcagccgcttc
ggcctgctggagctttcccgccagcgcctgcgcccggccctggccgagaccagctacatc
acctgcccccgctgcaccggcaccggccacatccgctccaccgaatcggcggccctgcac
atcctgcgcatcctcgaagaggaggccatgaaggagaacaccggcgccatccacgtccag
gttcctgtcgatgtcggcaccttcctgctcaacgaaaagcgcggcgacatcgcccgcatc
gaaatgcgccaccgggccaatctgctgatcgttcccaaccgccatctggaaacaccccag
cacgaaatcgtgcgactgcgccatgaccagttgaacctggaagacatcgcgctggccagc
taccagatggtgggcaaacccgccgaggaaggctatctttcccccgccgcccagaacgag
gtcaagccccccaaacaggaagccgtcgtcaagggcatcaccccggaacagccggcacct
atcgtcgaacccaggtcggcggctccccacacggcggaacgcccggcccagcccggcatt
ctcgccaggatcatcgcctggttcaccggcgacaaggaacaaccccagccggttgaggaa
aagaaaccgcaaaaaaccggacgtcgggaccgtaacgaacgcggtgagcggggcgaccgc
aacggcagggaccggaatggacgaggccgccaaggtcgcgagggtcgtgaaggtcgcgaa
ggccagggcaaccgcgaagagcgccaaccccgggaaggcaccgagcgcaaggaacgcaac
gagcggcccaagcgcgaggaagcccagaacgagggcgcacgggaaccccgccgccaacgt
ggtgagcgtggcgaaaagaccggcgacaaaaacgagcgtgccgagcagaccgaacgtccg
gaaaaggccgagcgcggcgaacggggcgaacgcggagaaagaaatgaacgtccgccccgc
cagcctcgtcagccccgtgccgaacaggccgagcaacaggtaattgccgagggaagccag
attcagggtgccgcaacggccgatgacaacgaagcccagagcgagcgccgacgtggtcgc
cggggcggccgcggccggggggagcgtcgcaacgaggaaaccggtgccagggaaaccatg
gccccaaccgctgacactgccgcgactggcgaactggtggagccgatagcagtggcacct
gccgttgaattaaccagggagaccgaggccgtcgccacaatgacggcagaagccactccg
aaagagcaagcttccgtgactgtggaagccgtgataccgactccagccgttgcccccccc
ccggttgcagcccgcgccatcgaggctccagtagcggtagccgcagcagagcccgcggct
cccgctcaagctgagaaaatcatcgaagctgaactggcgccagtagcggaagtggtggca
ccggccatcgagcagcagccggcagcagcaccggcaaagcgtgaagccgaaccgatcgac
ctgagtcaggcaggcttggtcatgatcgaaacggtgagcagccgtcctgcctccgcacca
gtcgcagtggcaacccagcctctgggccgcaaacccaagccggtgcaagtagtggccgac
gaacccttgcagatggtggaaacccgccactga
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