Desulfobulbus oligotrophicus: HP555_00645
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Entry
HP555_00645 CDS
T06967
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP555_00645 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dog03019
]
HP555_00645 (rnr)
03016 Transfer RNA biogenesis [BR:
dog03016
]
HP555_00645 (rnr)
Enzymes [BR:
dog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HP555_00645 (rnr)
Messenger RNA biogenesis [BR:
dog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HP555_00645 (rnr)
Transfer RNA biogenesis [BR:
dog03016
]
Prokaryotic type
tRNA degradation factors
HP555_00645 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
CsoSCA_N
RNase_II_C_S1
OB_RNR_1st
S1CSD-TOTE-2
OB_HELZ2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QQG64472
UniProt:
A0A7T5VAU4
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All DBs
Position
144946..147138
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AA seq
730 aa
AA seq
DB search
MAKKIFPSRRRSRPIYKKRRPSGPRGKDHDHLQASILTLLTGQEKPLTADEIANALYLHH
TQSSLLRKTLGQMLAAGTLLKKGKLFTAADKPEQLQGTLDLTSKGFGFVTPEGEQIKGGK
DVYIAQQNLNTAGPGDTVLIAIIGSTSRGRREGRVLRIMHRAVTRICGVYNLTAVGGQVL
PDDSRLPYALFIPQGEDLDAQDGMAVVAEITHYGSQQQGPTGRVTEVLGDPRQAGVQIRM
AIQQFSLHEQFPVAAEEEASRLLPVTQAQGDRIDLRHVLHVTIDGEDARDFDDAICVERR
KDGFVLYVSIADVGFYVQPGSSIDQEAYLRGTSIYLPDRVLPMLPERLSNDLCSLMPDTD
RPAFTAVLEFDNTGQRMAERYHKSLIRSKKRLTYTTVNQILSDHDQEVRSAHAELVPMLE
QANHLAALLNNHRARRGSLDFNLPEPVISLQGDRVVNISQAERYEAHLLIEAFMLAANEA
VAESLSKAKLPVLYRIHEPPDPAKLETFTDAAHALGIHTPRSAMGPSWFAQIIAQAKHSP
SEYIVNSLLLRTLQQARYSPENTGHFGLAAPYYLHFTSPIRRYPDLIAHRVLQALLTGTA
EQPLTPQQKTDLVEAGTHLSQCERKAIDVERNIHARCSALYLLDQVGNVFTGIISGVSAS
GLYIMLDDSFISGMIPLSSMTDDYYLYDSRRYRLIGENRHQIYQLGNRVHVRLDRVDLLD
KQLSFSPATD
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaaattttccctagccgcagacgatcaagaccgatttacaaaaaacgcagg
ccatccggccctcgtggtaaagatcacgaccacctgcaggcatccatcctcacactactg
acagggcaggagaaaccactgacagcggacgagatcgcaaacgctctgtatctgcaccat
acacagtcatctttactccgtaaaacactgggacagatgctcgcagcaggtacccttctt
aaaaaaggaaaactctttaccgcagctgataaacctgaacagctgcagggtacccttgac
ctgaccagtaaaggtttcggatttgttacccctgaaggtgagcagattaaaggcggcaaa
gatgtgtacatcgctcagcagaacctcaacaccgccggtcccggtgacacggtcctgata
gccatcatcggcagcacgtcaaggggccgaagggaaggtcgtgtgctcaggataatgcac
cgggctgtcacccggatatgcggtgtgtacaatctgacagcagtcggtggtcaggtcctt
ccggatgacagtcgcctcccctacgctctttttattcctcagggcgaagatcttgacgcc
caggatggcatggccgtggtggcggaaatcactcactacggttctcagcaacagggccca
accggccgggtcaccgaagtccttggcgatccgcgccaggccggtgtgcagattcgcatg
gcaatacagcagttttccctgcacgagcagtttccggtcgcggctgaagaggaggcttcc
cgtttactccccgtcacccaggcccagggcgaccgtattgacctgcgtcacgtgctccat
gtgaccattgacggtgaggatgcccgggactttgatgatgccatctgtgtggagcgccgg
aaggatgggtttgtcctttatgtgtccattgccgatgtcggtttttacgttcagcccgga
tcttccattgatcaggaagcctatctccgcggcaccagcatctatctcccggaccgggtg
ttgccgatgttacctgagcggttatccaacgatctctgcagcctgatgcctgataccgat
cgtcctgcctttaccgctgttctggaattcgataacaccggccaacgaatggctgagcgc
tatcacaagagcctgatccgcagtaaaaaacgcctgacatacaccacagtcaaccagatt
ctctcagatcacgatcaagaggtccgctccgctcatgcagagctggtgccgatgctggaa
caggccaaccacctggccgcactcctgaacaaccatcgggcccggcgcggcagccttgat
ttcaatctgccggagccggtgatcagcctgcaaggcgacagggtggtcaatatcagccag
gctgaacggtacgaggcccacctgctgattgaagcctttatgctggcagccaatgaggcg
gtggctgaaagcctgagtaaagcaaagttgccggtgctctatcgtattcatgaaccaccg
gatcccgccaagctggagacctttaccgatgccgcgcacgctttgggcatccacacacca
cgctcagccatgggaccgagctggtttgcacagatcatagctcaggctaaacactcaccg
agtgagtacattgtcaacagtctgttgcttcgcaccctgcagcaggcccggtattctccg
gaaaacactggccacttcggtcttgccgccccctactacctccacttcacctcaccgatc
cgccgctatccggacctgatagctcaccgggttcttcaggctctcctcaccggaacggcg
gaacaaccactcacacctcaacaaaaaaccgatcttgtcgaagcaggtacgcatctctcg
cagtgtgaacgcaaagccattgatgtcgaacgcaacatccacgcccgctgctcagcgctg
tatctgctggaccaggtcggaaatgtatttaccggtatcatctccggtgtcagtgcgtca
ggtctgtacatcatgctcgatgattcctttatcagcggcatgatcccgctgtcgagcatg
accgatgattactatctttatgacagtcgccgctaccggttgatcggagagaacaggcat
cagatctaccagctgggcaatcgggtgcacgttcgtcttgatcgtgttgaccttcttgac
aaacagctttctttctcgccggcaaccgactga
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