Desulfobulbus oligotrophicus: HP555_02145
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Entry
HP555_02145 CDS
T06967
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP555_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dog03019
]
HP555_02145
Enzymes [BR:
dog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HP555_02145
Messenger RNA biogenesis [BR:
dog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HP555_02145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
TerL_ATPase
P-loop_SecA
Helicase_C_2
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QQG64749
UniProt:
A0A7T5VBI6
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All DBs
Position
475678..476937
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AA seq
419 aa
AA seq
DB search
MKFNELHLNDYLIKAVQRCGYTTPTPIQQQCIPFILAGHDILGLAQTGTGKTAAFILPTI
QHLMAHPGKQIKALVIAPTRELAEQINDFTQTIIKHSRLQSLAVYGGVSKAAQIAKIRRG
VDIVIACPGRLLDICNDKAIDLSQVDVLILDEADHMFDKGFLPDIRRIIRLLPVKRQNLV
FSATMPDEIKQLAENILVNPKTVQLNPSRSVRNISHSVFTIDQAQKTRLLVQLLADEAMG
TTLVFTRTKHKAKNLARVLAQTGLKATSLQGNLSQSKRQQALSGFKDGTYTVLVATDIAA
RGIDVTGISHVINYDMPDTAEAYIHRTGRTGRAGCTGDALTFATSEDRRLIRVIERSLNK
PMSQLDLPQLPAVQHQPVQTTARPHKNTRPAGKSSQVSRKQQRCASNANIFGLAQRGKN
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttaacgagttacatctcaacgattatcttatcaaagcagtgcaacggtgcggg
tatacgacccccacccctattcagcaacagtgcatccccttcatccttgccgggcatgac
atccttggcctggcgcagaccggtaccggaaaaaccgcggcctttattctgccgaccatc
cagcacctgatggcacatccgggcaagcagatcaaggctcttgtcatcgcgccgacacgc
gaactggcggaacagattaacgatttcacgcagaccattatcaaacacagcaggctgcag
agtctggcagtctatggcggtgtcagcaaagcagcgcagatcgccaagatccgtcggggg
gttgatattgtgatcgcctgtcctggccgactgctggacatctgcaacgacaaggccatc
gatctcagccaggtggatgtgttgattctggatgaggcggatcacatgttcgacaaagga
ttcctgccggatatccgacgcattatccgtctgttgcctgttaagcggcagaacctggtc
ttttctgcaaccatgcccgatgagatcaagcaactggccgaaaacatcctggtcaaccca
aaaaccgtccagctcaatcccagccgttcggtgcgaaacatctcgcacagcgtcttcacc
atcgatcaagctcagaagaccaggctgctggtgcagttactggcagacgaagccatgggc
acaaccctggtctttacccgtaccaagcacaaggcaaaaaatctggcccgggtactggcg
caaaccggcctgaaagcaacatcactgcagggcaatctttcgcagtccaagcggcagcag
gcgttgagcggctttaaagacggcacctacaccgtgctggtcgccactgatatagctgca
cgcggcatcgatgttaccggtatctcccatgtgatcaactatgacatgcccgacactgcc
gaggcgtacatccatcgcaccggccgtaccgggcgggccggctgcaccggtgatgccctt
acctttgccaccagtgaagacagacgattgatccgggtgatcgagcggtctctcaacaag
ccgatgtcccagctggatctgccgcagctgcctgcagtgcagcatcagcctgtgcagaca
acagccaggccgcacaaaaacaccagaccggccggaaaatcatcgcaggtctctcgaaaa
caacaacgttgtgcaagcaacgcaaatatttttggacttgcccagcgcggcaagaactaa
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