Desulfobulbus oligotrophicus: HP555_04025
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Entry
HP555_04025 CDS
T06967
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dog
Desulfobulbus oligotrophicus
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dog03032
]
HP555_04025 (gyrB)
03400 DNA repair and recombination proteins [BR:
dog03400
]
HP555_04025 (gyrB)
Enzymes [BR:
dog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HP555_04025 (gyrB)
DNA replication proteins [BR:
dog03032
]
Prokaryotic type
DNA Topoisomerases
HP555_04025 (gyrB)
DNA repair and recombination proteins [BR:
dog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HP555_04025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Toprim_4
HATPase_c_3
GyrB_hook
PEPcase_2
Motif
Other DBs
NCBI-ProteinID:
QQG65093
UniProt:
A0A7T6APW3
LinkDB
All DBs
Position
complement(872163..874574)
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AA seq
803 aa
AA seq
DB search
MSDKNTTSYDAENIKVLDGLMAVRKRPSMYIGNTASEGLHHLIYEVVDNSIDEALAGYCD
TISIIIHEDNAVTIEDNGRGIPVDIHPIEKISALELVMTTLHAGGKFDHATYKVSGGLHG
VGVSVVNALSCRTVAEIKRNGKIYQQIYEYGERVTDLEIVGESNKTGTSITFKPDPEIFT
ETTDFQYEIVNNRMRELAFLNSNIHVFLKDERDGAENTYHFEGGTVSYVEYLNRKRTGIH
PYPIQITGEKENVQIDICFQYFDGYSERLFSFVNNINTKEGGSHVAGFRAALTKCINRYA
SDDVVPKHLKEKMGGDDVREGLTCVISVRVPNPQFEGQTKTKLGNSEVKSIVESICTEKI
GAYLEQNPAVARSILSKAVEAARAREAARKARDLSRTKNSLSVMMAGKLAECQSKNPVER
ELFIVEGDSAGGSAKQGRDRSIQAILPLRGKILNVEKARFDRILDSEEIKQLVASLGTGI
GGEEFDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMQPLIENGHIYIGQPPLYRLG
RGKKEQYFLNDDELNAYLYSQAGQMMRVRTDDGVDIDSTELAEILYKLSDFEKVILFLER
LNIPERMVLFLLANGVHSARQFEDKEFFAHLTSQLIEKNVKVGLTRSCSWRPSCQESEVI
FQGQGHVATVLGPNIPLIKEYRHAFKLYKSIHPYLDDGFSITRIGTSGQETELTAENWRQ
LIELIRNETIKGSHLQRYKGLGEMNPEQLWDTTMNPVNRTLIRVKIDDLEQTDDLFTTLM
GDKVEPRREFIQNHALEVADLDI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgataaaaatacaacgtcgtatgacgcagagaatataaaagtacttgatggcctg
atggctgttcgtaaacgcccttccatgtatattggcaatactgcatcggaaggactgcac
catttaatttatgaagtggttgataactccatagatgaagccttggccggttactgtgac
acgatcagtattattattcatgaagataatgcggtaacaatcgaagataatggacgtggc
attccggttgatattcatccaatagaaaagatatctgctctggaattggttatgactact
ctccatgccggcggtaaatttgatcatgcaacctataaggtttccggaggattacacgga
gtcggcgtttcagtggttaatgccttaagctgtcgaactgtagcggagattaagcgtaac
ggtaaaatttaccaacagatttatgagtatggtgaaagagttactgatctggagatagtt
ggcgaaagcaacaaaaccggaacaagtatcacctttaaacctgatcctgaaattttcact
gaaacgaccgattttcagtatgaaattgtaaataaccggatgcgggaactcgcttttctg
aacagcaatatccatgtttttttaaaagatgagcgtgatggtgctgaaaacacttaccat
tttgaaggcgggacggtttcttatgttgaatatcttaatcgtaaacgcaccggtattcat
ccttatcctattcagataacgggagaaaaagagaacgttcaaattgatatctgttttcag
tactttgatggatattcggaacgtcttttttcttttgtcaataatatcaatacaaaagag
ggtggatcgcatgttgccggtttcagagcggctttaactaaatgcatcaaccgctatgca
agtgatgatgtagttccaaaacatcttaaggaaaagatgggtggtgatgatgttcgtgaa
gggctcacatgtgttatttcagtcagggttccaaatccccagtttgaagggcagacaaaa
actaaattaggaaactctgaagtcaagtctattgtggagtctatctgtaccgagaaaatt
ggtgcttatcttgagcaaaatccagcagttgcccgaagtattttaagcaaggccgttgaa
gctgcccgtgcccgcgaagctgctcgtaaagcccgtgatctgtcccgcactaaaaacagt
ctttcagttatgatggccggaaaattggcggaatgtcaaagtaagaatccggttgaaaga
gaactgtttattgttgaaggcgactcagccggagggtctgctaaacagggaagagatcgt
tctattcaggctattcttcctttgcgcggtaaaattttgaatgtggagaaagctcggttt
gacagaattttagattctgaggaaattaaacaactggtagcttctctgggaaccggaata
gggggcgaagagtttgatctggacaaattgcggtatcataaaataattatcatgactgac
gctgatgtcgatggcgcccatattcgaactctgcttctcacttttttttatcggcagatg
cagccgcttattgaaaacgggcatatttatataggacaaccaccactgtaccgtttagga
agaggaaaaaaagaacagtatttcctcaatgatgatgagctcaatgcctatctctattcg
caagccggacagatgatgcgcgtgcggacagatgatggtgttgatattgattcaacagaa
ctggctgaaatactgtacaaactatccgattttgaaaaagtgatactttttcttgaacgc
ctcaacatacctgagaggatggtcttatttctcctggcaaacggggttcattcagcccgc
cagtttgaagacaaggaatttttcgctcatctgacctctcagctcatcgaaaagaacgtc
aaagtcggcttaacaagatcctgctcctggcgaccatcctgccaggagagcgaagttatt
tttcagggacagggacatgttgcaacagtgttgggacccaatataccgttgatcaaagaa
tatcgtcatgcctttaagttgtataaaagcatacacccctatctagatgatggtttctcg
attacccgaatcgggaccagcggccaggagactgagttaacggctgaaaactggagacag
ctgattgaattgatccgaaatgaaactattaaaggcagtcatttacagcgttataagggt
ttgggtgaaatgaaccctgaacaactgtgggatacaacgatgaatccggtcaacagaacg
ttgatccgggtcaaaattgatgatcttgagcagactgatgacttgttcacaacacttatg
ggtgacaaagtcgaaccaagaagagagtttattcaaaatcatgcccttgaagtagctgac
ctcgatatctaa
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