Desulfobulbus oligotrophicus: HP555_04480
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Entry
HP555_04480 CDS
T06967
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HP555_04480 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dog03400
]
HP555_04480 (recB)
Enzymes [BR:
dog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HP555_04480 (recB)
DNA repair and recombination proteins [BR:
dog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HP555_04480 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
AAA_30
DUF3799
Motif
Other DBs
NCBI-ProteinID:
QQG65177
UniProt:
A0A7T5VC83
LinkDB
All DBs
Position
complement(975903..979412)
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AA seq
1169 aa
AA seq
DB search
MQPLDPLTLPLHGTRLIEASAGTGKTYTLSLLFLRLLLERGLAVDQILVVTFTRAATSEL
RDRIRARLRQALAYLDHQQVAEPVLVALLHSLPPEQCRVRLADALVRIDETAIHTIHGFC
QRALQEHAFEAGSLFEFELLETEETLRMQVMEDFWRNRFYGADSDEAGWAASLWQDPAGL
LRALGRTVTLHCDLTPVVDQQKINDLIPRVEVLFAEVRRSWQLHAEAVQNILETHPDLQR
NEKTYRLSDRVPELLAAMNGLAAMANPPRRLPPGIEKLGNTAMTKALKTRCQTMITHEFF
TIFDRLYQAHAQLQELQTVAILHEARNFLQSALTRRKQLRRWLGYDDLLTQFVKALEQPQ
SGQQLATRMCSRYPAALIDEFQDTDPVQYRIFSHIYRRDRTCCLFLIGDPKQAIYAFRGA
DIFTYMQARRETPQNNRITMTTNYRATAPMVQAVNTLFGNRQDSFVFTDDIIFHPVEAAP
EQIAQPLLHSGLTVPPLSALLLDSERLKKGKASTISKEQAARAAATYCADLLLELLEAGQ
EGQTTINNQPLRAGDIAILVRSHRQADVMREALRQRGLKCAALNQQSVFAGPEAKNLLEV
LTAIEDPSDPGRLRYALTTDLFGLTGEELYQLTTDEHAWEHRLTTFFHCRRIWREQGILS
MFQYLLTTEGITRRLTAQHGGSRSLTNYLHLVELLQQSHTGRHGTTALLRWFHRQIDIPD
TTAENQLIRLESDEEVVRIVTIHGSKGLEFPVVMLPFLWAERPSTKTGPIIFHDRNTLRL
TADLGSGVEKHDLWAEEEALAEELRLLYVAITRAKSACLFCWGRVKGMEHTALSYLLHNG
LCPADDTELTYSLEQFNRNETLLALRPYPATFSSHRAVAKVKKVQLQPAIFHGQINPGWT
MTSYSRLSGGKETDPIGESGGRDDIPFQAAEDFTSIFTFPRGPVAGTCLHTLLEQLEYAR
PAGEQLAMIDQALLQAGINRNWQTAVAGWLDDLLTVPLPGTCSLGQLPEQDRLHELDFLF
PLHQVDLHRFNTLLIQGGGRSLNISSTSLHGLMKGFIDLVFRHEGRYYIVDYKSNYLGPD
YTAYDPQSLAASMENHQYHLQALIYTLALHRYLNVRIKGYAYDQHFGGVYYLFLRAMHPA
LPQGTGIHFSRADHQLVAALDACCHGEQR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcttgacccactgaccctccccctgcacggcacccgtctgattgaagccagc
gccggtaccggcaaaacatataccctgtcgctcctgtttcttcgtctgctgcttgagcgt
ggtctggcggttgatcagattctggtggtcacctttacccgggcagctaccagcgagctg
cgtgaccgcattcgtgctcgcctgcgccaggcccttgcataccttgatcatcaacaggta
gcagaacccgtgctagtggccctgctgcactcgctccccccggaacaatgtcgggtccgg
cttgccgatgccctggtgcggatagatgagacagccatccacaccatccatggattttgt
cagcgtgctcttcaggagcatgcctttgaagccggctcgctctttgaattcgagctcctg
gaaacagaagagacactgcgaatgcaggttatggaagatttctggcggaaccgtttctac
ggggctgattcagatgaggccggctgggccgcctccctatggcaggaccccgccggtctg
ctccgggcactgggcagaaccgtcaccttgcactgcgacctgactcctgtggttgatcag
cagaagatcaacgacctgattccccgggtagaggtgttgtttgctgaggttcggcggagc
tggcagctgcatgccgaggcagtgcaaaatattctcgaaacccatcctgacctgcagcgt
aacgaaaaaacatatcgcctctcagacagagtgccggaactcctggccgctatgaacgga
ttagcagccatggccaatccgcctcgacggctccctccaggcattgaaaaactcggcaac
accgccatgacaaaggcgctgaagacaagatgccagaccatgataacccatgaatttttc
actatttttgaccggctctatcaagcacatgcccagcttcaggagctccaaaccgtggca
atcctgcacgaggcccggaattttctgcagtctgcattaacccggcgcaaacaactccgg
cgctggttgggatacgatgacctgctgacacaattcgtcaaagccctggaacagccgcaa
agcggccaacagctggcaacacggatgtgcagccgctacccggcggcgctgatcgatgag
tttcaggataccgatccggtccagtaccgtatcttctcacacatctaccgccgtgaccgc
acctgctgcctgttcctcatcggtgatcccaaacaggcgatttatgccttccgcggcgcc
gacatcttcacctacatgcaggcccgccgtgaaacaccgcaaaacaaccgcatcaccatg
acaaccaactaccgggccacagcacccatggtgcaggcggtcaacaccctgttcggcaac
cgccaagacagtttcgtttttaccgatgacatcatttttcatccggtagaagccgccccc
gagcagattgcacagccccttctccactccggcctgaccgtgcctccgctgagcgcactg
ctcctggacagtgagcgtttaaaaaaaggcaaggcttcgaccatcagtaaagaacaggca
gccagggccgcggcaacctactgcgccgacctcctcctggagcttctggaggcaggacaa
gaggggcagaccaccatcaacaaccagcctctgcgcgccggcgacatagccattctggtc
cgaagtcatcgtcaggccgatgtcatgcgcgaagcactccggcagcgcggtctcaagtgt
gcggctctcaaccagcaatcggtctttgccggtccggaggccaaaaatctgctggaggtc
ctgacagccattgaagacccatctgatccgggtcgtctccgttacgcactcaccactgat
ctgttcggcctgaccggtgaagaactgtatcagctcaccacagatgaacatgcctgggaa
cacagactgaccaccttttttcactgccgccggatatggcgcgaacagggtatcttgtcg
atgtttcaatacctgctgaccactgaaggcatcacccgccgtctgacggcacaacacggt
ggaagccgcagtttgacaaactacctccatctggttgaactcctccagcagagtcatacc
ggtcgacatggtacaacagcactgctgcgctggttccatcgccagatcgacattccagac
accaccgctgaaaaccagctcatacgcctggaaagcgatgaagaggtcgtccgcattgtc
accatacacggctcaaaagggctggaattcccggtggtgatgctgccgtttctctgggct
gaacgcccttcaaccaaaaccggaccaattatctttcatgaccgcaatacccttcgtctg
acggccgatctcggcagtggtgtggaaaaacatgatctctgggcagaggaggaggcgttg
gctgaggagttgcgactgctctacgttgccataacccgcgccaaatccgcctgcctgttc
tgctggggaagagtaaagggcatggagcacaccgccctttcgtatcttctccacaacggt
ctgtgccctgcagacgatacggagctcacctactctcttgaacagttcaatcgcaacgag
acactgcttgccctgcgaccctaccctgcaacattcagctctcatcgtgctgttgccaag
gtgaagaaagtacagttgcagccggcaatttttcatggacagatcaatccaggctggacc
atgaccagctattcccgcctcagtggcggtaaagaaaccgaccccattggggagagcggc
ggccgagacgacatcccttttcaggcggccgaggatttcacctccatctttaccttcccg
cggggtccggtggcaggcacctgtctgcacacccttctggagcagctggagtatgcccga
ccggccggtgaacagcttgcgatgatcgaccaggccttgctccaggccggcatcaaccgg
aactggcaaacagccgtggccggctggctcgatgatctgctgacagttcccctgcccggt
acctgctctcttggtcagctacccgaacaggaccggctgcacgaactggatttccttttt
ccgctgcaccaggtcgatctgcaccggttcaacaccctgctgatccagggaggggggcga
tcgctgaacatctcctccacctcactgcacggtctgatgaagggattcatcgacctggtg
ttccgccatgagggccgatattatatcgttgactacaagtcaaactatctcggccctgac
tacaccgcctatgatcctcaatcccttgccgcgtccatggaaaatcatcaataccatctg
caggctcttatctacacccttgctcttcatcgctatctcaacgtccggataaaggggtat
gcgtacgatcaacacttcggtggtgtgtactatctgtttctgcgtgccatgcatccagcc
ttgccgcagggaaccggcatccatttttcacgagccgaccatcagctggtagcagccctg
gatgcctgctgccacggagaacagcgatga
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