Desulfobulbus oligotrophicus: HP555_04520
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Entry
HP555_04520 CDS
T06967
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HP555_04520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dog03400
]
HP555_04520 (mfd)
Enzymes [BR:
dog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HP555_04520 (mfd)
DNA repair and recombination proteins [BR:
dog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HP555_04520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_30
RecG_dom3_C
DUF7471
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QQG65184
UniProt:
A0A7T5VCC2
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All DBs
Position
992783..996328
Genome browser
AA seq
1181 aa
AA seq
DB search
MQSIIARLRESGHPPDIFGLHSASAALFLSRAVEALQRSYCVILPSDDQLEVLAQDFAFF
SDTRVLVYPGYEIPPYSPLSPDPATVCSRLATLYQLLEHTAPCIVLASVEAVLRRVLPSR
VLSRHCELVQIGEEIEQEPLIAALIAAGYQMSEMVRQEGDLALRGGIIDVYPPHLGTAKN
GPLRLDFFGDVLESIRVFDPISQRSLQEISEAVLVPATDILFPPPEQRQDIVAAADTAAV
QYHWSSDEHRLVRDRLSTGQTFPGLESLLPLVYGGRSGLQTFFDYLPAHTALVVYDPIAV
HQQQQLVRERIHANYEEALNRNSAILSPEDLFLSEAEWETNHDQLLAARLAFLHEPDQDQ
KLTLTCATGDHALLAQEIEIQRKKRGMLPPLVDRMQQWLRNGEQIVLACRSSRQAGHLQE
MLAHYQLRTVLLPAPFALENIVEKDVIYCFDQPLSRGFDLLTEHLHFLSAEELFGDKRLG
KRQRRSKQEYAEPVQIEHLQEGEFVVHRDHGIGIFRGLVNMEISGRHGDFMLIAYRDDNK
LYVPVDRLHWVSRYQGLTDQEPKLDSLGSQRWQSAKKKVTEAVWKIAQELLDIYAQRELR
EGHSFSAPGALYEQLEESFPYDETSGQARAINDVLGDLRREQPMDRLVCGDVGYGKTEVA
ARAAFKVIEDGYQVAILVPTTVLAEQHAATFRERFASFPVEIACLNRFRSSRRQKEIVAQ
LAAGTIDLIIGTHRLLSKDIQFKKLGLLVVDEEHRFGVSHKEKIKKIKATVDVLTLTATP
IPRTLQMSLLGIRDLSVISTPPQQRRSVKTFVAKYDQLVIREAIARELGRGGQIFFVHNR
VRSIHRIAAAIAALVPQARIGVAHGQMAGTQLEDIMVRFINHELDILMCTTIIESGLDIP
NANTIIINRADHLGLADIYQLRGRVGRSSRQAYAYLLVASLDHLTPDAQQRLRALMDCSE
LGGGFKLAMNDLQIRGGGNLLGVSQSGHIAAVGYDLYLELLQATVTDLKRKVQAGEMLPV
AEDTIDPEIKLRVAAYLPDTYIQDASQRYHVYRRLSVAGNGSNADLDDAEEEVVDRYGPL
PPEGRTLITAIRLKQRLRTLGINKLEQGEGCLIVSFAATTTVEPSRIVHLIEQQSNKKQR
TSSIRLTSDQRLVVSLGQQEDPFTQIDSLLNTLAEPVSIVS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcaatcattgcgcgactgcgtgaaagcggtcatcctcctgatattttcggcctt
cacagtgcttcagccgctctgtttctcagcagagcggttgaagcactgcaacgttcatac
tgtgttatccttccttccgacgatcaactggaagttcttgctcaggatttcgcttttttc
tccgatacccgggtacttgtctacccaggttatgagattcctccctacagtcctctttct
ccggatccggcaaccgtctgttcccgattagcaacactgtatcaactgctggagcacacg
gccccctgtatcgttctggcttcagtggaggcggtactgcgacgagttctaccgagtcga
gtgttgagccggcattgtgagttggtgcagatcggcgaggagattgaacaggaacccctg
atagccgcactcattgcggctggttatcagatgagcgagatggtgcggcaggaaggagat
ctggctttacggggtgggattattgatgtctatcctccgcatttggggaccgcaaaaaac
ggtccgctccggctcgatttttttggtgatgtgctggagtcgattcgtgtttttgatccg
atctcacagagatctcttcaggagatctcggaagcggtcctggtgccggccactgatata
ctcttccctccaccagagcagcgacaagacattgtagccgcagctgatactgctgccgta
cagtatcattggtcgtcggatgaacaccgtcttgtccgtgatcgtctgtccacgggacaa
acctttcccggcctcgaatcgttgttgcctctggtctatggcggcagatccgggctgcag
acattttttgattatctgccggctcacactgcccttgttgtgtatgaccccattgccgtt
caccagcagcagcagctggttcgcgagcggattcatgcaaattatgaggaggcattgaac
cggaattcagcgatcttatcaccagaagacctgttcctcagtgaggctgaatgggaaaca
aaccatgaccagctccttgcggctcgactcgcttttctccacgaacctgatcaggaccag
aaactgacgctgacctgtgccacaggagatcatgccttgctcgctcaggagatcgagatt
caacgtaagaagcgtggtatgctgccaccgctggtggatcgcatgcagcagtggctgaga
aacggtgagcaaatcgttttagcctgtcgatcatcacgacaggccggtcatcttcaagaa
atgcttgctcattaccagctgcgtaccgttcttctgcctgcgccgtttgctttagaaaat
attgttgagaaggatgttatctactgttttgatcaaccgctttcccgtggttttgatctg
ctcactgaacacctgcattttctttctgctgaggaactctttggtgacaaacgcttaggc
aagcgacaacgccggagtaagcaggagtatgctgaaccggtgcagatcgaacacctgcag
gagggtgaatttgtcgttcatcgcgatcatggcatagggatcttccgagggctggtcaat
atggagatatccggccggcatggtgacttcatgctgattgcctatcgggatgacaacaaa
ctgtatgtcccggtggatcggctgcactgggtcagccgttaccaggggttgacggatcag
gagccaaagctcgacagccttggttcgcagcgatggcaaagtgcaaaaaagaaggtaaca
gaggctgtctggaagattgcccaggagttactcgacatctacgcacaacgggaactccgc
gaagggcacagtttttctgctcccggtgcactgtacgagcaactggaggaatcttttccc
tatgatgagaccagtggacaggccagggctataaatgatgtgcttggtgatttgcgtcgc
gaacaacctatggaccgtctggtgtgcggggatgttggatacggtaagacagaagtagcg
gcacgggcagcgtttaaggtgatagaggacggctatcaggtcgccattctggtgccgaca
actgtattggcagaacagcatgccgccacatttcgagagcgatttgcatcatttcccgtt
gagatcgcgtgtctcaatcgttttcggagcagccggcgacaaaaggaaatcgtcgcccaa
ttagcagccggcaccattgatttgattattggtacccaccgtttactgtcaaaggatatt
cagtttaaaaaactcgggttgctggttgttgacgaagagcatcgttttggtgtgtctcat
aaagagaaaattaagaagatcaaggcaaccgttgatgtcctgacgctcaccgccacgccc
atcccgcggacgcttcagatgtctttattgggaatacgtgatctttctgtaatttcgaca
ccgcctcagcaacgccggtcagttaaaacctttgtagcgaaatacgatcagcttgttatt
cgcgaagcaatagcgcgggaactgggacggggcggccagatattttttgttcataaccga
gtgcgctccattcaccgtatcgctgctgccatcgccgcccttgttccccaggcgcggatt
ggagttgcacacggacaaatggccggtacgcagcttgaagacattatggttcgtttcatt
aatcatgaacttgatatactgatgtgcacaaccataatcgaatcaggattggatattcca
aacgccaataccatcatcatcaatcgggctgatcacctcgggcttgccgatatctatcag
ttgcggggcagagtcgggcgatcttcccgtcaagcgtatgcctatttactggtcgcctca
cttgatcacctcactccggacgctcaacagcgactgcgggccctgatggactgttcagag
ttaggaggcgggtttaaattagcgatgaacgatctccagattcgtggtggaggtaatctg
ctgggcgtttctcagtccgggcacatcgctgctgtggggtatgatctgtatttggaattg
ctgcaggccacggtaacagatttgaagcgtaaggtgcaggccggggagatgttgccggtg
gcggaagatacgattgatccggaaattaagctccgtgttgccgcctacttgccggacacc
tatattcaggatgccagtcagcgctaccatgtctaccggcggttgtcagtcgctggtaat
ggctcaaacgcagatctggatgacgcggaggaagaggtggtggacaggtatggccccctg
cctccggaaggacggaccctgataacagcgatcagactgaagcagcggctacgcaccctg
ggtatcaacaagctggagcagggagaaggttgtctgattgtttcttttgctgctacgacc
acggttgaaccgagccggatcgtacatcttattgaacagcaatcgaataaaaaacagcgc
acgtcatcgatccgtttgacatcagatcaacggctggtggtctctctcggtcaacaggaa
gacccttttactcaaatcgactcgttgttaaacaccctggcagagcctgttagcattgtc
tcttga
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