Desulfobulbus oligotrophicus: HP555_06295
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Entry
HP555_06295 CDS
T06967
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP555_06295 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dog03019
]
HP555_06295 (pnp)
03016 Transfer RNA biogenesis [BR:
dog03016
]
HP555_06295 (pnp)
Enzymes [BR:
dog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HP555_06295 (pnp)
Messenger RNA biogenesis [BR:
dog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HP555_06295 (pnp)
Transfer RNA biogenesis [BR:
dog03016
]
Prokaryotic type
tRNA degradation factors
HP555_06295 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH_2
Motif
Other DBs
NCBI-ProteinID:
QQG65504
UniProt:
A0A7T5VCS5
LinkDB
All DBs
Position
1408492..1410579
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AA seq
695 aa
AA seq
DB search
MMHTVAIDIGGHNISMETGKMAKQTNGSVMVSNGDTKVLVTVVAETEPRGMGFLPLTIEY
QERMYAAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPEGYDCETQLIATVFSADQ
NFDPDVLAMNGASAALLISDIPFGGPVGAARVGYVDGQYVLNPSKKQLERSQLNLVVAGT
KTNVVMVEGKASELSEDIVLEGIFFAHAGIQPLIELQLELQRRAGKSKRVVVAPQVNAVL
KEQVETLAASGMEEVLSIAEKVARSDRYSQLKAEVLAQLDPELYESVGQVHEILDDFRKR
MMRSRIVTKGERLDRRSFEEVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQ
HLEGLGGDVFRRFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGVEAVLPANDAFPY
TLRVVSEVLESNGSSSMATVCGSSLALMDAGVPVRTPVSGVAMGLIKEGDQVVVLTDIIG
DEDHLGDMDFKVVGTSDGITGLQMDIKIDGVDRQIMSQALTQAKNGRIHILEKMEEALSS
PRATVSEHAPKYITMKIDPDKIRDIIGPGGKIIREMTAEFDSKIDVEDDGTVKIFSNNVE
TANALVKRIQQITAVPEVGKIYEGEVRTIKEFGAFVQILPGTDGMVHISELANERVKNVT
DVVKEGDIIKVKVLEIDNRGRIRLSRKAVLAEDNE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatacagtagcaatcgatatcggcgggcacaacatatcaatggaaaccggtaaa
atggccaagcagacaaatggctcagtaatggtttccaatggcgacaccaaggtgctggtc
acagttgttgctgaaactgaacccaggggtatgggattcttaccactgactattgaatat
caagagcggatgtatgcggccgggcgcattcccggtagttattttcgccgggaaatcggt
cgaccgagtgaaaaagaggtgttgacctgtcgtctgatagatcggcctttacgaccactt
tttccggaagggtatgactgtgaaacccaattgattgccacggttttttccgcagatcag
aattttgatccggatgtgttggccatgaacggggcttccgctgccctgcttatctccgat
atcccatttggaggaccggttggagctgcccgggtcggctatgttgacggccagtacgtg
cttaatccgagcaagaagcaattggaacgctcgcaactgaatctggtcgttgccggtaca
aagaccaatgtggtgatggttgagggcaaggcgagtgagctgtccgaggacattgtactt
gaaggtatcttttttgcccatgccggtattcagccccttattgaactgcaactcgaactt
caacggcgggcgggtaaaagtaaacgggtcgttgtggccccgcaggtcaatgcagttctt
aaagagcaggttgagaccctggctgcttctggaatggaagaggtgctgagtattgcagaa
aaggtggctcgttctgatcggtacagccagctgaaggcagaggtccttgctcagcttgat
ccggagttgtacgagtctgttggtcaggttcatgaaattttagatgattttagaaaaagg
atgatgcgaagccgtattgtcacgaaaggcgagcgactggatagacgttcttttgaggaa
gttcgaccgatcagttgtgaagtggggatccttccccgggcgcacggctcagcccttttt
acccgcggtgaaacacaggccctggttatttgcacactgggcagtgagcgcgatgaacag
catctggagggacttggaggcgacgtgtttcgccggtttatgctccactacaactttccg
cccttctgcgttggagaggttcgtcctttacgtggtccaagccgccgggatattggtcac
ggtacgctggctcgtcgcggtgttgaagcggtcttgccggcaaacgacgcttttccgtat
acgttgagagtggtttcagaggtgttggagtcgaatggatcctcttccatggcaacagtg
tgtggttccagtctggcactgatggatgcaggggtgccggttcggacacccgtttcaggg
gtggccatgggtttgatcaaagagggcgaccaggtggtggtcctgaccgacattatcggc
gacgaagatcatctcggggatatggattttaaggtggtcggcacctctgacgggattacc
ggtctgcagatggacatcaaaatcgatggtgttgaccggcagatcatgtctcaggcgctg
actcaagctaaaaatggtcgaatacacattttagagaagatggaagaggccctgagctca
cctcgtgccacggtttccgaacatgctccgaagtatatcaccatgaagatagatccggac
aagatccgggatatcatcggccccggtgggaagatcatccgcgagatgacagctgagttc
gactctaagattgatgttgaagacgatgggacggtgaaaattttcagcaataatgttgag
accgccaatgccttggttaagcggattcaacagatcactgcagtgcctgaggtcggtaag
atctatgagggcgaagtcagaaccattaaggaatttggtgcctttgtccagattcttcct
ggaaccgatggtatggtgcatatctcagagctggcgaacgagcgggttaaaaatgtgacc
gatgttgttaaggaaggcgatattattaaggtcaaggtccttgagattgataatcgaggc
cgaatcaggttgagtcgtaaggctgtacttgcagaagataatgaataa
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