Desulfobulbus oligotrophicus: HP555_10505
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Entry
HP555_10505 CDS
T06967
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03410
Base excision repair
dog03430
Mismatch repair
dog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HP555_10505 (recJ)
03430 Mismatch repair
HP555_10505 (recJ)
03440 Homologous recombination
HP555_10505 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dog03400
]
HP555_10505 (recJ)
DNA repair and recombination proteins [BR:
dog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HP555_10505 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HP555_10505 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HP555_10505 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Toprim
Motif
Other DBs
NCBI-ProteinID:
QQG66260
UniProt:
A0A7T6AR80
LinkDB
All DBs
Position
complement(2310826..2312496)
Genome browser
AA seq
556 aa
AA seq
DB search
MMTKEFGIPEPVGELLHSRGITTLDQAQEFLYPHLSMLPSPDRMKDMDKAVTCIINACNE
QQPIFIHGDYDVDGISATALLISFFTEIGQRAYYYIPNRLKEAYGLSFASIDRLLAQCPG
QGGVLISVDCGITAVEEVGYARHQGLRVVITDHHEAPEQLPLADAILNPKQPGCTFPCSF
LSGVGVAFFLLIALRRAMGLSLNLKKYLDFVALGTVADVVPLQGVNRILVRSGLEVISSK
HRLGVDFLCRKSGLTGREALSEDISFRLAPRMNAGGRLGNPSKGVELLLAETATNAQMLA
EQLETMNLARKQLEASALAVLQENYQEQLSAQSSSIILYHPDCHVGVLGILASRLVDRCG
RPVLVFSDDVQNASVLRGSGRSIQGINLYHALEECAASIEQFGGHAMAVGLSVRRENLSQ
FKRDFDEQIKRMILMIENRVHTTVDYFLPNANMLSTSFANALQMMQPFGEGNHEPCLLLA
EQHLLRTRSRNGHLLFQLQGGEGVLPGIGFNLAEEFFDCPQRANLIFHLKRSWFKGVERT
QIQALELHRPDRDSST
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgatgactaaagagtttggtattcccgaaccagtcggtgagctgctgcacagtcgaggc
atcacaacactcgaccaggcgcaggagtttctgtatcctcatctatcgatgctcccatcc
ccggacaggatgaaagatatggacaaggcagttacgtgcataataaatgcgtgcaatgaa
cagcagccgattttcatccatggagactatgatgttgacggtatcagcgccaccgcgctt
ttaatctcttttttcaccgaaatcgggcaaagggcttattactatatacccaacaggctc
aaggaagcttatggactttcttttgcgtccatagatcgattgctcgcccaatgtccaggg
cagggtggagtactcatttcggttgactgtggcattacagctgttgaagaagttggatac
gcccggcaccagggtcttcgggttgttataactgatcatcatgaagctccggaacaacta
cctcttgccgatgctattctcaaccctaagcaaccaggatgcacctttccttgctcattt
ctgtcaggagtaggggttgctttctttctgctcatcgctttacgaagagccatgggcctg
tcactcaatctgaagaagtaccttgattttgttgctcttggtacagtggctgatgttgta
cctttgcagggggtgaatcgtattttagttcgatccgggcttgaagttatatcgtcaaag
catcggttaggtgtggattttttgtgtcgaaaaagcgggttgactggcagggaagcgctg
tcggaagacatctctttccgcctggccccaagaatgaatgcaggtggccggttaggcaat
ccgtcaaagggtgtagaattacttcttgctgaaacagcaacaaatgcacagatgctggct
gaacaactggagaccatgaacctggcaaggaaacagttagaagcttcagctttagcggtt
ttacaagagaactatcaagaacaactttccgcacaaagctccagtatcatactgtatcat
cctgattgccatgtcggtgtgctgggaattttagcttcacgactggttgatcgttgcggc
aggccggtgctggtgttctcagatgatgtccagaatgcatctgtactgcgtggatccgga
cgatcaattcaaggtatcaatctgtaccacgctctggaagagtgtgcagcgtcgatagaa
cagttcggtggacatgcaatggcagtcggcttatcagtacgtagagagaatctatctcaa
ttcaaaagagactttgatgagcaaatcaaacgtatgattttaatgatagagaacagagtt
catacaacagttgattactttctgcctaatgccaatatgctctctacttcttttgccaac
gcactgcagatgatgcaaccatttggggaaggcaatcatgaaccgtgtttacttctggct
gaacaacatctgttacggacaaggtcacggaatggtcacctcttatttcagctgcaagga
ggggagggcgtgctgccaggtattggctttaatcttgcggaagagttctttgattgtccg
caacgagccaatcttattttccatttaaaacgttcctggtttaaaggtgtcgagcgcact
cagattcaggcattggagctgcaccgacctgatcgcgatagctctacttaa
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