Desulfobulbus oligotrophicus: HP555_10640
Help
Entry
HP555_10640 CDS
T06967
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dog
Desulfobulbus oligotrophicus
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dog03019
]
HP555_10640 (hrpA)
Enzymes [BR:
dog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HP555_10640 (hrpA)
Messenger RNA biogenesis [BR:
dog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HP555_10640 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
WHD_HA2
AAA_22
nSTAND3
AAA_30
SRP54
T2SSE
NAT10_TcmA_helicase
PhoH
SLFN-g3_helicase
nSTAND_NTPase5
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QQG66285
UniProt:
A0A7T5VE61
LinkDB
All DBs
Position
2337146..2340913
Genome browser
AA seq
1255 aa
AA seq
DB search
MHRSAQEIFRKFMYFSYPSELPVCEQRDQIVTAIRDHQVLIIIGDTGSGKTTQLPKMCIE
AGQGTNGMVGCTQPRRLAAVSVADRVAEETGALNKIGFKIRFHDQTSPETVIKFMTDGVL
LAETRHDPQLKQYDTLIIDEAHERSLNIDFLLGYIKQLLPDRPDLKVIISSATIDAEKFS
KHFAGAPVLSVSGYSYPITTLYRDISEQDEEDASYVEQAVAVVEELASDPLDGDILVFMP
TERDIFDTIDSLEHLNNSHLLLPLFGRLSAADQRKVFRSSRHRKIIVATNVAETSITVPG
IRFVVDTGLARISRYNPRTGTTSLKISRISKASCDQRRGRCGRTGPGTCIRLYSEEDFLL
REDFTLPEIQRSNLAEVILQMISLQLGSPDVFPFVDAPPGSAIRDGYRTLKELGALTGRH
YLTPKGRLMSRLPLDPRISRIIVESMAAGSTREIVILAAALSSQDPRVRPPGKEQKAEEA
HQRFTDNRSDFLTLLNIWQDLFVDNDTSPTSSQLSRYCKTNYLSWQRMREWKDVQEQIVR
LLREAKQFRLNAAPAGYEAIHQALASGFLRNICLKKEKNVYITAGGKEVVLFPGSALYNR
GPRWAIAAELTETSQLFAKTVATIDVDWLERLGGTLCKRSWSEPHWEKRSGKVIAFERVS
LFGLTIVAGRKVEYGRINEATLMEARDIFIRSALMENQLGGRYPFLEHNVALIARFQEME
ERFRRRDIVVESEALYQFYASRLGKVYDRFTLNKMLRKNNNDSLLRMTEEDICSIVPEPE
ELYRFPLSLQVGDFRLDVSYLFHPGNEADGVSVRIPGALLHQINPQVFEWLVPGLLPEKI
LILLRRLPKNQRRCLVPLPDSVDRIMDNLVVGKGSLYQQLEHILTRRYRISVQRTDWQPD
QLPPHLRMRFLLVDKDGTVQLASRGFDDLLASVGHADNTMKQSDIPPVRTITAADLDNIA
PTLSLTDTKGQIVGLLFPALGVDSIKNSVQLRYIDDERKSRQLNRAGLQFLYGEQFKKEL
HDLRARCRASLINHSASWLSLGTGYTSGELRTALQAFLLDDIFHTWNGELPSCRHFQKIV
AAVTAQGMSGSVNELLDRIHELIRQRRVVSDKITQWSTRAKKSRSYLQTQHDEFLNALDQ
IVPARFLETLRAEQLQHRPRYLQALALRIERAEHSPLKDRQKAEQLVRPLSRVQQMAFFS
HPTSACLTCQEEYLAMLEEYKVSLFAPELGTAQPISGKRLQQKWQDVENLCRRVE
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgcatcggtctgctcaagaaattttccgtaaattcatgtatttttcttatccttccgaa
ttaccggtctgcgaacaacgagaccagatcgtcactgctatccgtgaccaccaggtcttg
atcattatcggtgataccggatccggcaagaccacccagctccctaaaatgtgcattgag
gccggtcagggaacaaacggtatggtcggctgtacgcaacctcgtcgtcttgccgcagta
tcggtggcagacagggttgctgaagagaccggggctttgaacaaaatcggtttcaagata
cgttttcatgatcagacttcaccggaaacagtcatcaaatttatgaccgacggtgttctt
ctggctgaaacccgccatgatccccaattaaaacagtatgatacccttatcattgatgag
gcccatgaacgtagtctcaatatcgactttcttctcggatatatcaagcagttgttgccg
gatcgaccggatttgaaggtaatcatctcttcggcaaccattgatgctgaaaaattcagc
aaacactttgccggagcacctgttttgtcagtgtccgggtattcatatcccatcaccacc
ttgtacagggatatatctgaacaggatgaggaagatgcctcgtacgttgaacaggccgtc
gcggtggtggaagagcttgcatctgatcctcttgatggcgatatccttgttttcatgccc
actgaacgggatatcttcgacactattgacagccttgaacatctcaataacagtcatctc
ctgcttcccctgtttggcagactctctgctgctgatcaacgcaaagttttccggtcatcg
cgtcatcgtaaaatcattgttgccacaaacgttgctgaaacctcgatcactgtaccggga
atccggtttgtggttgacaccggactggcgagaatttcccgttacaacccgcgaaccggt
accaccagtcttaagatcagccggatctccaaggcaagctgtgatcaacgtcgcggtcgg
tgcggccggaccggacccggcacctgtatccgcctttacagtgaagaagattttctgctg
agagaagatttcacacttccggagatccagcgatccaacctggccgaagttattctccag
atgatctccctgcaactgggcagtcctgatgtctttccttttgtcgatgcacctccggga
tcagccattcgcgatggataccggacacttaaggagttgggggctctaaccggcagacac
tacctgacacccaagggacgtctgatgtcccgactgccgttggaccctcgtatctcccgc
attatcgtcgaatcaatggctgcaggctcaacacgggaaatcgtgattctggcagctgca
ctctccagtcaggatccccgtgttcggcccccaggcaaagaacagaaagcagaggaggcc
catcagcgatttacagataatcgttcagattttctcaccctgctcaacatctggcaggat
ctgttcgtcgataatgacacctcccccacctcatcccagctctcccgttactgcaagacc
aactacctgtcatggcagcggatgcgcgagtggaaagacgttcaggaacagattgtccgt
ttgcttcgtgaggcaaaacagttccgtctgaacgcagctccagccggctatgaagcaatc
catcaggctttagccagcggctttctccggaacatctgcctgaaaaaagaaaagaacgtc
tatataaccgccggtggtaaagaagttgttctttttcctggatcagctttatacaacaga
gggccgcggtgggcaatcgctgctgagctgacagaaacctcgcagctgtttgcaaaaacg
gtggcgaccattgacgttgactggttggagcgacttgggggcacgctctgcaaacgatcc
tggtctgaaccgcattgggagaagagaagcggtaaagtcatcgcctttgaacgcgtcagt
ttatttggcttgaccattgttgccggtcgaaaggttgagtacggcaggataaacgaagcg
actctgatggaggccagagatatttttatccgctcggctctgatggaaaaccagctggga
ggcaggtatccttttctagagcataacgttgccctgattgcccgttttcaggagatggaa
gaacgatttcgtcgtcgtgatattgttgtagaatccgaggcactctatcagttctacgcc
tcacgactgggcaaggtgtacgatcgtttcactctcaacaaaatgctgcggaaaaacaac
aatgacagcctgttacgaatgacggaagaggatatctgcagcattgttcccgaacctgag
gagttgtatcgttttcctctgtctctgcaggtcggggacttcaggctggatgtatcctat
cttttccatcctggaaacgaggccgacggtgtgtcggttcgcattcccggtgccctgctt
catcagatcaatccccaggtgtttgagtggctggttcctggtctcctgcctgaaaagata
cttatcctgctgcgtcgtttacccaaaaaccagcgacgctgtcttgttcccctacccgat
tcagttgatcggatcatggacaaccttgttgttggcaagggttcactttatcagcagttg
gaacacatccttacccgccgttaccggatatccgtgcagcgaactgattggcagcctgac
cagctccctccacaccttcgaatgcgttttcttcttgttgacaaagatggaactgttcag
cttgcaagccgggggtttgacgatcttctggccagtgtcgggcacgctgacaacacaatg
aagcaatctgatataccgcctgtacgcaccattactgcggctgacctggacaatattgcc
ccaacactatccctgactgatacgaaaggacagattgttggtttgctttttccggccctg
ggtgttgacagtatcaaaaacagcgtccagttacgatatatagatgatgaaagaaaaagc
agacaactgaaccgagcgggtctgcagtttctttacggcgaacagtttaaaaaggagctg
catgatctgcgcgcacgatgcagggcgtcactcatcaaccattccgcctcctggttgagc
ctgggtaccgggtataccagcggcgaattgcgcactgcactgcaggcctttctcctggac
gacatctttcacacgtggaatggagagcttccctcttgtcgtcatttccagaagatcgtt
gctgcggtcactgcccaagggatgtctggttctgtaaacgaactgctcgacagaatccat
gaactcatccgtcagcgccgtgtcgtttcagacaaaattacacagtggagcacccgggca
aaaaaatccaggagttatctccagactcaacatgatgagtttctgaacgcccttgaccag
attgtacctgcccgctttctggaaacattaagagcagaacagttgcaacatcggccccgt
tatctccaggcattggccttacgcattgagcgggcggagcattcacctttaaaagacaga
caaaaagcggaacagcttgtcaggccactttccagggtacagcaaatggcttttttctcc
caccccacttctgcctgtctgacctgccaggaggagtacctggccatgctggaggagtat
aaggtgtctctctttgccccggagttgggaacagctcagccgatttccggaaaacggtta
cagcagaaatggcaggatgttgaaaacctgtgccgccgtgttgaatag
DBGET
integrated database retrieval system
