Dokdonia sp. MED134: MED134_00555
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Entry
MED134_00555 CDS
T03275
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03030
DNA replication
dok03410
Base excision repair
dok03420
Nucleotide excision repair
dok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MED134_00555 (polA)
03410 Base excision repair
MED134_00555 (polA)
03420 Nucleotide excision repair
MED134_00555 (polA)
03440 Homologous recombination
MED134_00555 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dok03032
]
MED134_00555 (polA)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_00555 (polA)
Enzymes [BR:
dok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MED134_00555 (polA)
DNA replication proteins [BR:
dok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MED134_00555 (polA)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MED134_00555 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MED134_00555 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
EAQ39064
LinkDB
All DBs
Position
1517832..1520681
Genome browser
AA seq
949 aa
AA seq
DB search
MTNTAENTQKRLFLLDAYALIFRGYYALIKNPRITSSGMDVSAIMGFTNSLFDVIKRERP
DHLAVAFDKGGSSARVEAYADYKANRDETPEAIRIAVPHIQEILKAMHIPIIEREGVEAD
DLIGTLAKQAEKEDFKVFMVTPDKDYAQLVSENIFMYKPARMGNGIEIWGIPEVQKRFEV
ERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLENTDKLKGKMKEKVI
ANAELGLLSKQLATIMLDCDVQFDAKDYELSEPDAEAVTKKFDELEFRRMKDQFVKIFSG
EAEQGTQVSSTPSAKKQAATAAGAGQFSLFGGDGGATAATVADASTRKTIKDTQHFYQTI
DSPLARKLFIQNLLKQTSVCFDTETTGLDPLVAELVGVAFSWEAGKGYYIPFPESKDEAQ
ALIEELRPFFEHTGIEKIGQNLKYDIKVLAKYDVKVKGKLFDTMLAHYLINPDMRHNMDV
LAETYLNYTPVSITELIGKKGKNQKSMRDVPLDQQTEYAVEDADITLQLKQHFEKELDEA
GTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEAGEEFKI
SSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSKLKST
YVDALPEQVAQDGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENH
TLLAADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKT
VNFGIIYGVSAFGLSNQTDLSRGEAKELIDNYYKSYPKLRNYMSELVDFARENGYVKTVL
DRRRYLNGINSSNGVVRGAAERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQ
VHDELVFDVPNIELDDIKNLIKTEMESAFKMAVPLDVEVGVGQNWLEAH
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatactgccgaaaatactcagaaacgactttttttactagatgcctacgcattg
atttttagaggatattacgctcttattaaaaacccgcgtatcacaagttctggtatggat
gtgagtgctataatgggatttacaaatagcctttttgatgttataaaacgagagcgacca
gatcacctagctgttgcttttgacaagggcggaagctctgctcgtgttgaagcttatgca
gattataaggcaaatcgtgacgaaactccagaagcgatacgcatagcggtacctcatata
caagaaatacttaaggctatgcacattcccattattgagcgtgaaggtgtagaggcagat
gatcttataggtacccttgcaaaacaagccgaaaaggaagactttaaagtctttatggtt
acaccagataaggattatgcacaactagtctcagaaaacatatttatgtacaagcctgct
cgtatgggtaatggtattgagatatggggaatcccagaggtgcaaaagcgttttgaagta
gagcgcccagagcaagttatagattatttagggatgatgggtgatgcgtcagacaacata
ccaggacttccaggtgtaggtgataaaacggcaaagaaatttatcgcagcatacggctct
atggaagggcttcttgaaaatacagataagctcaagggcaagatgaaagaaaaggttatt
gcaaatgcagagctagggcttctttctaaacaactcgcaactataatgctagattgtgat
gtacagtttgacgcaaaagattatgaactctcagagccagatgcagaggcggtcacaaag
aagtttgacgagctggagtttagacgtatgaaagatcagtttgtaaaaatcttttctggc
gaggcagagcaaggcacgcaggtatcttctaccccatctgcaaagaagcaagcagctact
gcagcaggtgctggacagttttcactttttggaggagatggtggcgctactgcagcaacc
gtagcagatgcctctacacgtaaaactataaaagatacacagcacttttaccagacaata
gatagcccgcttgcgcgaaaactatttatacaaaacctactcaaacaaacttctgtatgt
tttgacacagaaactacagggctcgacccgcttgtggcagagcttgtaggagtcgctttt
tcttgggaagctggtaagggatattacataccatttccagaaagtaaagatgaagcacaa
gcacttatagaagaattaaggccgttttttgagcatacagggattgaaaaaataggtcaa
aatctcaaatacgacattaaggtccttgcaaagtatgatgtaaaagttaagggtaaactt
tttgacacaatgcttgcacactatctcattaacccagatatgcgtcataatatggacgta
ctggcagagacctaccttaactacacacctgtatctatcacagagctaataggcaaaaaa
ggaaaaaaccaaaagtctatgcgcgacgtgccactagaccagcaaacagagtatgcggta
gaagatgcagatattaccctccaactcaaacagcactttgagaaggagcttgatgaagcg
ggcacgcgtaaattatttaatgacattgagatcccactacttagagtacttgcagcaatg
gaggtagaaggaatcaacctggacgtaaacttcttagaaagtttatctggtgatcttaat
gcagatatagaacgtcttacttctgagatttatgaagaagctggagaagagtttaaaata
tcttcacctaagcaactaggcgaaattctttttgacaaaatgaagcttgtagacaagcct
aaaaagacaaaaacaggacaatattcaaccgcagaagatgtactatcataccttgcaaaa
gatcacgatatcatccagaaagtactagattaccgcgggctatctaagctaaagtctaca
tatgtagatgcattgccagagcaagtcgctcaagatggccgtgtacatacagactatatg
caaaccgtagcagcgacgggaagattaagttctaacaatcctaacctacaaaacatccct
atacgtacagaacgtggtcgccaggtacgtaaagcatttgtccctagagatgaaaaccac
acactgctcgcagcagattattctcaaattgagctacgtattatagcagctctaagcgag
gaagaaaatatgatacaagcctttacagatggtgaagacattcacgctagtacagcggca
aaagtttttaatgtaccactagaagaggtgactagagagcaacgtagtaatgcaaagaca
gtaaactttggtattatatacggtgtctctgcctttggactttctaaccagacagaccta
tcccgaggagaagcaaaagagcttatagacaactattataaatcgtacccaaaactgcgc
aactatatgagtgagcttgtagacttcgctagagaaaatgggtatgtaaaaacagtacta
gacagacgtcgctatcttaatggtattaactcaagcaacggtgttgtgcgtggtgctgca
gagcgtaatgctgtaaacgcacctatacaaggaagcgcagcagatattattaagattgct
atgattaatatttttgagaagctagaaaacagtgattacaaaacaaaaatgcttctccaa
gtgcacgatgaacttgtttttgacgttccaaacattgagcttgatgacatcaaaaaccta
atcaaaaccgaaatggaaagtgcctttaaaatggcagtacctctagatgtagaagtagga
gtaggtcaaaactggctagaggcacactaa
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