Dokdonia sp. MED134: MED134_01180
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Entry
MED134_01180 CDS
T03275
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dok
Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dok03032
]
MED134_01180 (topA)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_01180 (topA)
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MED134_01180 (topA)
DNA replication proteins [BR:
dok03032
]
Prokaryotic type
DNA Topoisomerases
MED134_01180 (topA)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MED134_01180 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
EAQ39189
LinkDB
All DBs
Position
complement(1365171..1367711)
Genome browser
AA seq
846 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGSDYKVESSFGHIADLPSKELGVDVDGDFTPKYKVSDDK
KKVVRNLKSLANKAEMVWLASDEDREGEAIAWHLEQELGLTPDRTKRIVFHEITKTAILR
AIENPRKIDYDLVNAQQARRVLDRLVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVERER
EVLGFEPKASYRVDAEFTTQDGKSFKAKLPKNITTKKEAKAFLEKNLSATFKVDALTKKP
AKKSPAPPFTTSTLQQEASRKLYFSVSKTMTMAQRLYEAGHITYMRTDSVNLSKDAKAGA
EAEIVAAYGKEFHKERNYKGKSKGAQEAHEAIRPTDFSKHSVNMDRDQIRLYELIWKRAI
ASQMSEAQLERTNVQIASSAGTDNFTANGEILKFEGFLKVYLEGSDDEDVEETGLLPDLK
TGEALLNKYITATERFTRPPYRYTEASLVKKLEELGIGRPSTYAPTITTIQNRKYVEKGT
VEGKERSYDVLSLENNEIKDRTLTETVGSDKGKLVPTDVGMVVNDFLVQHFENILDYNFT
AKVEADFDDIAEGKQEWTKMMKDFYKDFHPHVKDVEKNAEREVGERILGKDPETGKPVSV
RLGKFGPMVQIGSVEDDEKPRFASLGPDQTLSNLTYEQAMDLFKLPKDLGTFEEEEVSVN
NGRFGPYVKFGKTFVSLPKGRDPMDVDLDEAIVYIKEKQKADAPIYMYEDLPVQKGTGRF
GPYIKWNGMFINVNKKYDFDNLSDEDIVELIEVKKQKEIDKVLQDFPEEGIRVEKARWGR
SNIIKGKLKIELSKDIDAAALSLDEIKDYIEKKAPKKKAPKKKAAKKKAPAKKKAPAKKK
TTAKKK
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatctcgtcattgtggagtcacctgcaaaggctaaaacgatagaaaaattt
ctaggctcagactataaagttgagagtagttttggacacattgcagaccttccctctaag
gagttaggtgttgatgtagatggagattttactccaaaatataaagtctcagacgataag
aaaaaggtggtgagaaaccttaagtctcttgcaaataaggcagagatggtgtggctcgct
agtgatgaggatcgcgagggagaggctatagcctggcacttagaacaagagcttgggtta
acaccagaccgtacaaaacgtattgtttttcacgagattacaaagacggctatactaaga
gctattgagaaccctcgtaagattgattatgatcttgtaaatgcacaacaagcgcgtaga
gtgcttgatagattagtggggtatgagctctctccagtattatggagaaaggtaaaagga
ggtctttcggcggggcgtgtgcaatctgtttctgtaagacttattgtagagcgtgagcgt
gaggttttaggttttgagcctaaagcatcatatagagtagatgcagagtttactacgcaa
gatggaaagtcttttaaagcaaaacttcctaaaaatataactaccaaaaaagaggcgaag
gcttttcttgagaaaaaccttagtgctacttttaaagtagatgcgcttactaagaagcca
gcaaaaaaatcaccagcaccaccatttactacctctactttacaacaggaagcaagtaga
aaactgtatttctctgtaagtaaaacgatgacgatggcacagcgactctatgaagctggg
catattacatatatgagaacagatagtgtaaatctatctaaagatgcaaaggctggagca
gaggcagagattgtagctgcttatggtaaggagtttcataaagaacgtaattataaagga
aagtctaagggagcacaagaagctcacgaggcgatacgtcctacagatttctcaaagcat
tctgtaaatatggatcgcgaccagatacgtctttatgaacttatctggaaacgtgcgatt
gcctcacaaatgagcgaggcacaactagagcgcacaaatgtgcaaatagcttctagtgca
ggtacagataattttacagcaaatggggagatcttaaagtttgaaggtttcttaaaagta
tacctagaaggtagtgatgatgaagatgtagaagaaacaggtttacttcctgatcttaaa
acaggagaggcgctacttaataaatacattaccgccacagaacgttttacaagaccacca
taccgttatacagaagcttctctagtaaagaaacttgaagaactaggtataggacgtcca
tctacatatgcacctactattacgactatccaaaatcgtaagtatgtagaaaaaggtact
gtagaagggaaggagcgatcttatgatgtgcttagtcttgaaaataacgagataaaagat
agaactcttacagaaactgtagggtcagataaaggaaagcttgttcctacagatgtaggg
atggtcgtaaacgactttttagtccagcattttgaaaacattcttgattataactttact
gcaaaggtcgaagcagattttgacgacatagcagaaggaaagcaggagtggactaaaatg
atgaaggatttctataaagacttccatcctcacgtaaaagatgtagaaaaaaatgcagag
cgtgaagtaggagagcgcatactaggtaaagatccagaaacaggtaagcctgtgagtgtg
cgtctaggtaaatttggtcctatggttcagataggttctgtagaggatgatgagaagcct
cgatttgcaagtctaggtccagatcaaacgcttagtaaccttacgtatgagcaggcaatg
gacctctttaaactacctaaagatttaggaacttttgaagaagaagaggtgtctgtaaat
aatggtcgttttggaccgtatgttaagtttggaaaaacatttgtatcactacctaaagga
cgtgatccaatggatgtagatctagatgaagctatagtgtacatcaaagaaaaacaaaag
gcagacgctcctatatatatgtatgaggatcttccggttcaaaaaggtacaggtcgtttt
ggcccgtatataaaatggaacggaatgtttataaacgtaaacaagaagtacgattttgat
aacctctctgatgaggatattgtagagcttatagaagttaaaaagcaaaaggaaatagat
aaagtacttcaggattttccagaagaaggaatacgtgtagaaaaagcacgctggggacgc
tctaatattataaaaggtaagctcaaaatagagcttagtaaagatatagatgctgctgct
ttaagtcttgatgagataaaagactacatcgagaagaaagctccaaaaaagaaagctcca
aaaaagaaggctgccaaaaagaaggcgccagcaaaaaagaaagctccggctaagaaaaaa
accacagcaaaaaagaaataa
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