KEGG   Dokdonia sp. MED134: MED134_02050
Entry
MED134_02050      CDS       T03275                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
dok  Dokdonia sp. MED134
Pathway
dok00740  Riboflavin metabolism
dok01100  Metabolic pathways
dok01110  Biosynthesis of secondary metabolites
dok01240  Biosynthesis of cofactors
dok02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:dok00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    MED134_02050 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MED134_02050 (ribD)
Enzymes [BR:dok01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     MED134_02050 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     MED134_02050 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD APOBEC_N
Other DBs
NCBI-ProteinID: EAQ38739
LinkDB
Position
1187588..1188523
AA seq 311 aa
MPNPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAKANTPELIAKSTLYVSLEPCSH
WGKTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLMQAGVDVTVGVLEKECQEVNKR
FFTYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITNSHSRQLVHKLRSKEMGILVGG
KTVIEDNPTLTTRDWHGSNPTRIVIDTQGNLPKKLHIFNNEAPTIVLKDSDPKSICKELF
EHNIQSVIVEGGAATLQRFIDAALWDEASVFTGLTNFNAGIKAPKKTSQFTLQSSQHVQG
DRLDIYTRSDS
NT seq 936 nt   +upstreamnt  +downstreamnt
atgcctaacccctccgtaggagccgtacttgtgcataacaacacgattattgcagaaggc
tatacaagtgcatatggcggtcctcacgcagaggtaaattgtatcgctttcgcgaaagcg
aataccccagaactcattgccaaatccaccttgtacgtatctctagaaccttgctcacac
tggggaaaaacccctccttgtgcagatctcgttatagactcaggaattaaacgcgtagtg
ataggcaccatagacccttttgccaaggtagccggcgctggcataaaaaaacttatgcaa
gctggagttgatgttaccgtaggcgtgcttgaaaaagaatgtcaagaggtaaataaacgc
ttctttacttatcacaatgagaagcgaccatttataattttaaaatgggccgaaaccgca
aatggttttatagctcctgctagcagagataagcaagaaccggtgtggattacaaactct
cactctagacaactagtgcacaaactacgtagcaaggagatgggcattttagtgggcggc
aagaccgttatagaagataatcctacacttaccacacgtgactggcacggcagcaacccg
accagaatcgtgattgacacacaaggtaacctacctaagaagttacacatatttaataat
gaagcacctacaatagtgcttaaagacagtgacccaaaaagcatctgtaaagaacttttt
gagcataacatacaatctgttattgtagaaggtggcgctgctaccctacaacgttttata
gatgcagctttatgggatgaggctagtgtgtttacaggccttacaaactttaacgcaggt
ataaaggctcccaagaaaacaagccaatttacactacaatctagtcaacacgtacaaggt
gacaggttagacatttacacacgcagcgactcttga

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