Dokdonia sp. MED134: MED134_02340
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Entry
MED134_02340 CDS
T03275
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED134_02340 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dok03019
]
MED134_02340 (recQ1)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_02340 (recQ1)
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MED134_02340 (recQ1)
Messenger RNA biogenesis [BR:
dok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MED134_02340 (recQ1)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MED134_02340 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
EAQ38797
LinkDB
All DBs
Position
complement(1136877..1139072)
Genome browser
AA seq
731 aa
AA seq
DB search
MKTEQIDLHKELKKYFGFGQFKGLQEEVIKSIVGGNHTFVIMPTGGGKSLCYQLPALIAE
GTAIVVSPLIALMKNQVDALRGISQDEGIAHVLNSSLTKGEIKTVKEDIARGVTKLLYVA
PESLTKEENVEFLREQKISFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDNIPIIAVT
ATATPKVQEDILKNLGITNANTFKASFNRPNLYYEVRPKTAQVDADIIRFVKQNEGKSGI
IYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAFAETSISRRKFILHYFGEEFDNATGEGGMLDDNMRNPKKKHEAKDELV
KVLTVIRDTKEIYKSKEVVFTLRGKENAIITSHKTHEQAFFGIGKDQKKEYWFALLRQAI
VAGYIKKDIETYGVIKMTPKGLSFIEEPSSFMMTDDHTFGVDADNTIISAQKAGGADKKL
MEMLRDLRKKVAKRLDVPPFVVFQDPSLQDMAIKYPITIQELGNVHGVGDGKAKKYGKDF
VKLIQTYVEENDILRPDDLVVKSTGANSALKLYIIQNVDRKLPLDDLASAKGKEMPDFIK
EMEAIVFSGTRLNIDYWINDILDEDQQEELHDYFMEAETDKIDVAMEEFDGEYEDEELRL
YRIKFMSEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagaacaaatagacttacacaaagaacttaagaaatattttggctttggtcag
tttaagggtttgcaggaagaggtaattaaaagcattgtagggggaaatcacacctttgtt
ataatgcctactggtggtggtaaatcactatgttaccaactgccagctcttatagcagag
ggaaccgctattgtggtgtctcctctcatagctcttatgaaaaatcaagtagatgccttg
cgcggtatctcacaagatgagggcattgctcacgttttaaatagttctcttactaaaggt
gagattaaaacggttaaagaggatatagcaagaggtgttacaaaactgctgtatgttgct
ccagaatcacttaccaaagaagaaaatgtagagttcttacgtgagcagaaaatatctttt
ctggctatagacgaggcacactgtatctcagagtgggggcacgattttagacctgagtat
agaaaccttagaaagattataggaagaataggtgataatatccctatcatagctgtaaca
gctactgccacaccaaaagtgcaagaagatattcttaaaaacttaggaataacaaacgca
aatacttttaaagcttcctttaatagacctaacctttattatgaagtgcgccctaaaaca
gcacaagtagatgcagatatcattcggtttgtaaaacaaaatgaaggtaagagcggcata
atctattgccttgcacgtaaacgcgtagaagagctcgcacaaactctacaggtcaatggt
cttaaagcagtgccttatcacgcagggctagatgcaaagactagagcaagacatcaagat
atgttcttaatggaagatgtagatgttgtggttgcaaccatagcctttggtatgggtata
gataagccagatgtacgttttgtaattcaccacgatatacccaagagtatagagagctat
tatcaagaaacaggtcgtgctggtcgcgatggaggcgaaggccattgtcttgctttttat
gcctacaaggatattgagaagctcgagaagtttatgagtggtaaacctgtagcagagcag
gagataggtcacgcattattgcaagaagtagttgcatttgcagagacaagtatttctaga
agaaagttcattctgcactattttggtgaagagtttgataacgctactggagaaggtggg
atgctggatgataatatgcgcaacccaaaaaagaagcacgaagcaaaagatgaacttgta
aaagtgcttactgttatacgtgacacaaaagaaatttataagagtaaagaagtagttttc
acgctgaggggcaaggaaaacgcaatcatcacctctcataaaacacacgagcaagcattc
tttggaataggtaaagaccagaaaaaagaatattggtttgcactactaagacaagctatt
gtcgcaggatatattaaaaaagatatagagacctatggtgtgataaaaatgacacctaaa
ggtctttccttcatagaagaaccatcttcatttatgatgacagatgatcacacctttggg
gtagatgcagacaatacaattatctctgcccaaaaagctggcggtgcagataaaaaactg
atggaaatgctacgtgacttacgtaaaaaggttgccaaaaggctcgatgtacctccattt
gtagtttttcaagacccatcattgcaagatatggctataaagtaccctatcaccattcaa
gagcttggtaacgtacacggtgtaggcgatggaaaggcaaaaaagtatggaaaagatttt
gtaaagctcatacagacttatgtggaggaaaatgatatccttcgtccagatgatcttgtt
gttaaaagtacaggagcaaacagtgctcttaaactttatattatacaaaatgtagatcgt
aaactgccgctagatgatcttgcttctgcaaagggtaaggaaatgccagattttattaaa
gagatggaagccatagtttttagtggtaccagactcaatatagactactggattaatgac
attcttgatgaagatcaacaagaagagttacacgattattttatggaggcagagacagat
aagatagatgtcgctatggaagagtttgatggagaatatgaagatgaggagcttcgtctg
tatagaattaaatttatgagcgaggtcgcaaactag
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