Dokdonia sp. MED134: MED134_02425
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Entry
MED134_02425 CDS
T03275
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MED134_02425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dok03021
]
MED134_02425 (rpoC)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_02425 (rpoC)
Enzymes [BR:
dok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MED134_02425 (rpoC)
Transcription machinery [BR:
dok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MED134_02425 (rpoC)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MED134_02425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
EAQ38814
LinkDB
All DBs
Position
complement(1116300..1120601)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDNVQQPKFNAISIGLASPESILGASKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEDLNKMDFLTEEEYLNILDSLPQENLY
LDDEDPNKFIAKMGAECLIELLRRIDLNELSYELRHKANNETSKQRKTEALKRLQVVEAL
RDANKNRENLPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGIPKGMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVAVPSQDMVLGLYYMTKARKSTPEF
HVKGEGITFYSAEEVNIAYNEKRVDINAIIKIRAKDFNENKELVYKVMETTVGRVLFNEA
VPEEAGYINEVLTKKSLRDIIGRILKVTSVPVTAAFLDRIKTMGYGFAFRGGLSFSLGDI
IIPDEKHGMIDEANEQVEGITGSYNMGLITNTERYNQVIDVWTSTNATLTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNDGGGAIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINSTDCGTLRGVEVAALKKNE
EVIESLSARIVGRTSLNDVINPLTNEVIVEAGVEIDEDIAELIGAAPIETVEVRSALTCE
AKKGICVKCYGRNLATNKTVQMGEAVGVVAAQSIGEPGTQLTLRTFHVGGVAGGVSEDSS
VTAKFDGKLEIEDLKTVMGEDNEGNPAEIVISRTSEAKVSDPKTGITLSTNTIPYGSQIF
AKSGDKVKAGEVICKWDPFNGVVISEFAGKIKFESIEQGITYRVETDEQTGFQEKVISES
RDKKKIPTLIIEDSKGNALRSYNLPVGAHLMIDDGDKIKEGKILVKIPRRSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSVTPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLIHKADFIEENDAMYGMKVVEDAGESENLKPGQLVTPREL
RDENSLLRREDKNQVTARDVQPATASPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKIDYLEGLKENVIVGHKIPAGTGMRRYDDILVGSKEDLANMMQEKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataatgacaatgtacaacagccgaagtttaacgctatctctattggtctt
gcgtctccagaatctattcttggggcatcaaaaggagaagtattaaagccggaaacaatc
aactacagaacgcacaagccagagcgtgacgggttgttctgtgagcgtatttttggtccc
gtaaaggattatgagtgtgcttgtggtaaatataaaagaatacgctacaaagggatcgtt
tgtgaccgttgtggtgtagaggtgacagagaagaaagtacgtcgtgatcgtgtaggacac
attaaccttgtggttcctgtggctcacatctggtactttagatctttacctaataaaata
gggtacttacttggtcttccatctaagaaattagatatgatcatttattacgagcgttac
gtggttatacaaccaggtattgcaaagaatgaagagggtgaagaccttaataaaatggat
ttccttacggaagaagagtacttaaacatacttgacagtttaccgcaagaaaacctatac
cttgatgatgaagatccaaacaaatttatcgccaaaatgggtgctgaatgtttgatcgaa
cttttaagaagaatagatcttaacgagctttcttatgagttacgtcacaaggcaaataac
gaaacgtctaagcaacgtaaaacggaggcacttaaacgtcttcaagttgtagaggcatta
cgtgatgcaaataaaaaccgtgagaatcttccagaatggatgattatgaaggttgtacca
gtaattccaccagaattacgcccactagtaccactagatggaggtcgttttgcaacatca
gatcttaatgatctttaccgtcgtgtaattatacgtaacaaccgtcttaagcgattgatg
gaaatcaaagcgccagaggtaatcttacgtaatgagaagcgtatgctacaggagtctgta
gattcactttttgataacacacgtaaatcttctgcagtaaaaacagattctaacagacca
ttaaagtctctttctgattctttaaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgtagattactcagcacgttctgtaattgttgtaggaccagaattaaagtta
tttgaatgtggtattcctaagggaatggcagcagagctttataagccttttgtaatacgt
aagcttatagagcgtggtattgtaaagactgtaaaatctgcaaagaaaataatagacaaa
aaagagcctgtagtttgggatatattagagaatgttcttaaaggacatcctatcctcctt
aaccgtgctcctacgcttcaccgtctaggtatacaggcattccagcctaagcttattgaa
ggtaaagcgatacaattacacccacttgtgtgtacagcatttaacgccgattttgacggt
gaccagatggcagtacacttaccacttgggccagaggcgatacttgaggcacagttatta
atgcttgcttctcataatatcttaaaccctgcaaatggtgctccagtagcagtaccttct
caggatatggtattaggtctttactatatgacaaaggccagaaaatcgactccagagttt
cacgtaaaaggagaaggaatcactttctactctgcagaagaggtaaacattgcctataat
gagaagcgtgtagacattaatgcgatcattaaaatacgtgctaaggattttaatgaaaac
aaagagcttgtatacaaagtaatggagacgactgtaggtcgtgtgctatttaatgaggct
gtaccagaagaagctggatatattaacgaagtattgactaaaaagtcactgcgtgatatt
ataggacgtattcttaaggtaacaagtgtaccagttactgcagctttccttgaccgtatt
aagactatgggatatggatttgcattccgtggaggattatcattctcacttggagatatc
attatcccagatgagaagcacggtatgatagacgaggcaaatgagcaagtagaaggtatt
acaggatcttataatatgggtcttattactaatacagagcgttataaccaagttattgat
gtgtggacatctacaaacgcaactcttactgagctttctatgaagcgtatccgtgaggat
caacaagggtttaactcggtgtatatgatgcttgactcaggagcacgtggatctaaagag
cagatacgccagcttacaggtatgcgtggtctaatggcaaaacctaagaaatctaacgat
ggaggtggggctattattgaaaacccaattctttctaactttaaggagggtctttcaatt
cttgagtactttatctctacgcacggtgcacgtaaaggtcttgcagataccgctcttaaa
acggcagatgcaggttacttaacacgtcgtctagtagatgtatctcaagatgtaatcata
aacagtacagattgtggtacattaagaggagtagaagtagctgcgttaaagaaaaacgaa
gaggtgatagaatctctaagtgctcgtatcgtaggtcgtacatctcttaatgatgttata
aacccgcttactaacgaggtaatcgttgaggctggtgttgagatagatgaagatatcgca
gagcttataggcgctgcaccaatagaaactgtagaagtacgttctgcgcttacttgtgag
gctaagaaaggtatttgtgtaaaatgttacggtcgtaacctagctactaataaaacggta
caaatgggtgaggcagtaggagtagttgcagcacagtctattggagaaccaggaacacag
cttacacttcgtaccttccacgtaggaggggttgcaggaggtgtatctgaagactctagc
gtaacagctaagtttgatggtaaactggagatagaagatcttaagacagtaatgggagaa
gataatgaaggtaaccctgcagaaatcgtaatctctcgtacttctgaagcaaaagtttca
gatcctaagacgggtatcacacttagtacaaatacaattccttacggttcacaaatattt
gcaaagtctggtgataaggtgaaagctggagaggtaatctgtaagtgggatccatttaac
ggagttgtgatttcagaatttgcaggaaaaattaagtttgagtctattgagcaaggtata
acgtaccgtgtagagacagatgagcaaacaggtttccaagaaaaagtaatttctgaatct
agagataagaagaaaataccaacattaattattgaggatagcaaaggaaacgcgctacgt
tcttacaacttaccagttggagctcaccttatgatagatgatggagataagattaaagaa
ggaaaaattcttgtaaaaatacctcgtaggtctgcaaaggctggagatattacaggaggt
ctaccacgtgtgacagaattatttgaagcacgtaacccatctaacccagcagtagtgtct
gagatagacggtgtagtatctttcggaaaaataaagcgtggtaatcgtgagattatcgta
gagtcaaaacttggtgaagttaagaagtacctagtaaaattatctaaccagattcttgta
caagaaaatgattatgtaagagcaggtatgccactttctgatggttctgtaacgcctaac
gatatattaaatatcaaaggcccatctgcagtacaacagtaccttgttaacgaagtacaa
gaagtatatcgtctacaaggggtgaagattaacgataagcactttgaggttgtagtacgc
cagatgatgcgtaaagtacgtatacaagatccaggtgatactatcttcttagagaaccag
cttattcacaaagcagactttatcgaagagaatgatgctatgtacggaatgaaagtcgta
gaagatgcaggagaatctgaaaacctgaaaccaggacagctagtaactccacgtgaactt
cgtgatgaaaattctttactaagaagagaagataagaatcaagtaactgcacgtgatgta
caaccagctactgcttctcctatccttcaaggtattacaagagcatcgctacagactaag
tcatttatctctgcagcatctttccaagagacaacaaaagtacttaacgaagctgctgta
agcggtaagatagattacttagaaggtcttaaagaaaatgtaattgtaggtcataaaatt
ccagctggtacaggtatgcgtcgttatgatgacattctcgtaggtagtaaggaagatcta
gcaaatatgatgcaagaaaagcaagaagtaaactataactag
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