Dokdonia sp. MED134: MED134_02485
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Entry
MED134_02485 CDS
T03275
Symbol
topI
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dok
Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dok03032
]
MED134_02485 (topI)
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_02485 (topI)
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MED134_02485 (topI)
DNA replication proteins [BR:
dok03032
]
Prokaryotic type
DNA Topoisomerases
MED134_02485 (topI)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MED134_02485 (topI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CaMKII_AD
ParB
Motif
Other DBs
NCBI-ProteinID:
EAQ38826
LinkDB
All DBs
Position
1102560..1103639
Genome browser
AA seq
359 aa
AA seq
DB search
MTLTASQIENILRNPEETAAAANLIYVSDADLNIRRKKKKKNFHYYFNDKPLKDKKELER
INNLVIPPNWDKVRIAYPPNGHLQVVGRDAKNRKVYRYHDLWSKIRNQTKFYKLANFGNA
LPSIRERIDEDLDAPEMSKRKVLALVLRLMEETHIRIGNDYYAKRNKTYGLSTLRTRHVT
TTKEKIRFEFVGKKGKKHNITLRNKKLAKLVNRCEEIPGWELFQFYDTNGEKHRVDSTMV
NDYIHELSGDLFSAKDFRTWGATKTFFETVHDLGYTKDEKENKANILTAFDAAAEALGNT
RNVCRKYYVHPQIVDAYESGSIVAEFKKVDAHQGARPFFTETEEVLLQMISKFELDFSK
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgacactcaccgccagccaaatcgagaacatcctaagaaacccagaggaaactgcagcc
gcagcaaatctcatttacgtctctgatgcagacctcaacataagaaggaaaaagaagaag
aaaaactttcactattactttaatgataagcctcttaaggacaaaaaggaattagagcgc
atcaataatcttgtgataccgcctaactgggataaagtgcgcattgcatatcctcctaac
ggacatttacaagtggtaggtcgcgatgctaaaaacagaaaagtataccgctatcacgac
ctatggtcaaaaattagaaaccaaactaagttttataaactagccaattttggaaacgca
ctgcctagcatacgcgagcgcatagatgaggatcttgatgctccagagatgtcaaaacgc
aaggtgcttgcacttgtcctcaggcttatggaagaaactcacatacgtataggtaacgac
tactacgcaaagcgcaataaaacctacggcctctctaccttacgcaccagacacgtgaca
actaccaaagaaaaaatccgctttgagtttgtgggtaaaaaaggcaaaaagcacaacatc
accctacgcaataagaaactagcaaaacttgtaaaccgttgcgaagaaatacctggctgg
gagttatttcaattttatgatacaaatggcgaaaagcaccgcgtagatagcacgatggta
aacgattacatacacgagctgagtggtgacttattttcggcaaaagattttagaacttgg
ggagccacaaagactttttttgaaaccgtgcacgacctaggctacacaaaagacgaaaaa
gaaaacaaagcaaacatactcaccgcctttgatgccgctgcagaggctctaggcaataca
cgcaatgtatgtcgcaagtactatgtgcatcctcaaatagtagatgcctatgagtctgga
tctatcgtcgctgagtttaaaaaggtagatgctcaccaaggcgcaagaccattttttaca
gaaactgaggaggtattactgcaaatgatttcaaagtttgaattagattttagcaagtga
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