Dokdonia sp. MED134: MED134_03979
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Entry
MED134_03979 CDS
T03275
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
MED134_03979 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dok03016
]
MED134_03979 (trmU)
Enzymes [BR:
dok01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
MED134_03979 (trmU)
Transfer RNA biogenesis [BR:
dok03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
MED134_03979 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
NAD_synthase
Asn_synthase
DUF7411
ThiI
QueC
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
EAQ38441
LinkDB
All DBs
Position
complement(764243..765436)
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AA seq
397 aa
AA seq
DB search
MKTVVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVTISDECPWLDDSNDAMLVA
EKLGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGADY
VATGHYCQKSSIEVDGKTVYQLIAGADNNKDQSYFLCQLSQDQLAKTLFPIGHLQKPEVR
DIALQQELVTAGKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEVPETVIPEVAGGDKAS
NAFAKAELENLVKKPSYTVAEGRVVGKHQGAHYFTIGQRKGLGVGGTVEPLFVIDTDVKD
NVIYTGQGKNHRGLYRKGLFVKEEEIHWIREDLTLAVDETMQVEARIRYRQPLEKATLYR
VDGGMYVIFDNPQTAIAEGQFVAWHHGEECLGSGVIS
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggtagtagtaggtctaagtggaggagtagatagtagtgttacagcatacttg
cttaaggagcagggatacaatgtgataggcctttttatgaaaaactggcacgatgactct
gtaacaatctctgatgagtgcccgtggctagatgatagtaacgatgcgatgcttgttgcc
gaaaagttaggaatcccttttcaaacggtagatcttagtgagcagtatcaagaacgcatt
gtagattatatgtttagagagtacgagatggggcgcacgcctaatccagatgttctatgt
aatcgcgagattaaatttgacgtgtttatgaaaattgcactttcactgggtgcagactac
gtcgcaacgggacattactgccagaaatcatctatagaggtagatggtaagacagtatac
caacttatcgctggggcagataataataaagatcaatcttactttttatgtcagctatcg
caggatcaactggcaaaaacgttgtttcctataggccatttacaaaagccagaggtacgt
gacatagcactgcaacaagaactcgttactgcaggtaagaaagattctcaaggactttgt
tttatagggaaggtacgtctgccagattttcttcagcagcagcttaaacctaaggaaggt
gttatcgttgaggtgccagagaccgttataccggaagttgcgggtggtgataaggctagt
aacgctttcgcgaaagcggaattagaaaaccttgtaaaaaaaccatcatataccgtagcc
gaaggaagagtagtagggaagcatcaaggggctcattattttaccataggccagcgcaaa
ggactaggcgtaggcggaacggtagagccactctttgtaatagatacagatgtaaaggat
aatgtgatatacaccggtcaaggaaaaaaccatagaggtttatatcgtaaaggacttttt
gtaaaggaagaagagatacactggatacgagaagatcttacacttgcggtagatgagaca
atgcaggtagaggcacgcatacgttaccgtcaacctcttgagaaagccactttatataga
gtagatggaggtatgtatgtcatatttgacaacccacaaacagccatagccgaggggcaa
tttgtagcctggcatcacggtgaggagtgtctcggttctggggttatttcgtaa
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