Dokdonia sp. MED134: MED134_05094
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Entry
MED134_05094 CDS
T03275
Name
(GenBank) DEAD/DEAH box helicase
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MED134_05094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_05094
Enzymes [BR:
dok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MED134_05094
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MED134_05094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Zn_ribbon_PriA
PriA_C
Helicase_C
nSTAND3
TrmB
Zn_ribbon_6
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
EAQ40102
LinkDB
All DBs
Position
complement(518459..520915)
Genome browser
AA seq
818 aa
AA seq
DB search
MPHFIDVILPIPVENTFTYLVSEAEYNYIQKGMRVAVPFGKKKVYASIVKNKHTNAPTIY
EAKEIQQILDEDPIVTEQQLTFWSWIANYYMCTEGEVMRAALPKAFLLESETVIRLKSDG
LVINDEELQDDEFLIYEALQHRSELKVHEVMDILDKKKILPSIQRLIDQGVLEMQEEIYE
QYVPKLVKFITIAPEYDSEEALPVILEELSRAPKQREMVLTFFSLKAKTNKPISSQELQK
ASGATASQLNALVDKGVFQTYQKRQDRVGFEGEVFETKTLNTYQATALSEIKTHFETKDV
TLLHGVTASGKTEIYVQLIEEMLATGDQILYLLPEIALTTQLISRLQTYFGERVAIFHSK
YSVNERVEVWNNVLKKMDKAQIIIGARSALLLPFRDLKLIVVDEEHESSFKQYDPAPRYH
ARDCAIVLGAFFKAKVLLGSATPSVETVYNAQSGKYGYVSLKQRHGNILMPEINLVDIKE
KSRKREMTGHFSDTLLRAITDALALGEQVILFQNRRGFSPILECNTCGHAPQCPNCDVSL
TYHKYRSQLRCHYCGYNIALQQKCMACGSTDLTTKGFGTEQIEAELKELYPDNNIARMDS
DTTRGKYGFEKLITAFEQEQIDILVGTQMLTKGLDFRNVTLVGIMNADSMLNFPDFRAHE
RSYQLIAQVSGRAGRTEKQGKVLVQTYNPYHQILQQVSSNKFEEMYKEQLEERRNFKYPP
FHRLIRITLKHRDYQKIDESSIWLSKALRQTLGAEAVLGPETPSIARIRNLYRRNILIKI
SRRQNLLETKKTIGRVVTSFNAIAQYRSVRLVVDVDCY
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgccccactttatagacgtcatacttcctatacctgtagaaaatacgtttacctacctc
gtctcagaggcagaatataattacattcagaaaggaatgcgtgttgcagttccgttcggg
aaaaagaaagtgtacgcctcaatcgtaaaaaataagcacactaatgctcctacaatttat
gaggcaaaggaaattcagcaaatattagatgaggatcctatagtcacagagcagcaactc
acattctggtcttggattgcaaattattatatgtgtaccgagggggaagtgatgcgagca
gcattaccaaaggcatttttactagagagtgagaccgttataaggctcaagtctgatggt
cttgtaattaatgatgaagagcttcaagatgatgagtttttaatttacgaagcattacaa
catcgctcagagcttaaggtgcacgaggtgatggatattcttgataaaaagaaaatactt
ccttctatacagcgcctcatagatcaaggggttttagaaatgcaagaagaaatttacgag
cagtatgtccctaaacttgtaaagtttattacaatagccccagagtatgacagtgaggag
gctttgcctgttattctagaagaattatctcgcgcaccaaaacaaagagagatggtgctc
acttttttttcgcttaaagcgaaaactaataaacccatatcttcacaagagttgcaaaaa
gcatctggagcaaccgctagtcaactcaacgcgctggtagataaaggagtttttcaaaca
tatcaaaaacgccaagatagagtagggtttgagggagaagtttttgagacgaagactctc
aacacctatcaagcaacagcactgtctgagattaaaacacattttgaaacaaaagacgtt
acattattacacggtgtaactgcctctggaaagacagaaatttatgttcagctcatagaa
gaaatgcttgcaactggagatcaaattctatacctcctgccggagattgctcttactacg
cagttaataagcaggctgcaaacttattttggagaaagagtagctatatttcattctaag
tattctgtaaatgagcgcgtagaagtatggaataatgttcttaaaaaaatggacaaggcc
caaatcattattggggctagaagcgcattactactaccgtttagagatttaaaacttatt
gtggtagatgaggagcacgagagtagctttaagcagtatgatcccgcgcctaggtatcac
gctcgcgactgtgctattgtactaggagcattttttaaagccaaagtcttattaggttct
gcgacgccatctgtcgagacggtttataatgcccagagcggaaagtatggttatgtatct
ttaaaacagcgtcacggtaatattttaatgccagaaatcaaccttgtagacataaaagaa
aagtctcgtaaaagggagatgacaggtcacttttctgatacattattacgagcaattaca
gatgcacttgcgctaggtgagcaggttattttatttcaaaacaggcgtggtttttcccct
atacttgagtgtaatacttgtgggcacgctccacaatgtcctaattgtgatgtgagtctt
acctatcataagtataggtcacaacttcgttgtcattattgtggttataatattgcctta
cagcaaaagtgtatggcttgtggtagcacagatcttacaacaaaggggtttggtacagaa
caaatagaagcagagctcaaggagttgtatccagataacaatattgctcgtatggactca
gacaccacaagaggtaagtatggttttgagaaacttataacagcttttgagcaagagcag
atagatattttagtaggcacgcaaatgcttaccaaagggttagactttagaaacgtaacc
ctagtaggaattatgaatgcagatagtatgcttaactttccagactttagagcacacgag
cgtagctatcaattaattgctcaggtatctggtagggcaggacgcaccgaaaagcaaggt
aaagtacttgtgcagacttataatccttatcatcaaatcttacagcaggtttcttcaaat
aaatttgaagagatgtataaagaacaattagaagagcgtcgtaactttaagtatccacca
tttcataggttgatacgcattacattaaagcatagagattatcaaaaaattgatgagtcc
agtatttggttatctaaggcattgcgacaaactctaggtgcagaggcagtactaggtccc
gaaacaccatctatagcaagaataagaaacctatacagacgtaatattcttattaaaata
agtagaaggcaaaatttactcgaaactaaaaaaacgataggtagagtagtaacaagtttt
aacgctattgctcaatatcgtagtgtacgattagtcgtagatgtagattgttattag
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