Dokdonia sp. MED134: MED134_05539
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Entry
MED134_05539 CDS
T03275
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03030
DNA replication
dok03430
Mismatch repair
dok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MED134_05539
03430 Mismatch repair
MED134_05539
03440 Homologous recombination
MED134_05539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dok03032
]
MED134_05539
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_05539
Enzymes [BR:
dok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MED134_05539
DNA replication proteins [BR:
dok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MED134_05539
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MED134_05539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
DUF7508
Motif
Other DBs
NCBI-ProteinID:
EAQ40191
LinkDB
All DBs
Position
413408..414808
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AA seq
466 aa
AA seq
DB search
MTELAPTYHCIIDVETTGKGINGNRITEFCAVRLKDGEIIDKFTSLVNPEQYIPPFITNL
TGIDDAMVEDAPLFEEIAQRVLEITEGAIFVAHNVNFDFNVIKGEFKRLGVSFVRKKLCT
VRLSRKLIPNLFSYSLGNLCASIGIPLNNRHRAEGDTDATVILFKRLLDLDEGKKVMNAF
LNVRSKEATLPPHLPSRIIQELPETAGIYLFKDRAGKIIYVGKAINIKKRVLSHFYDKKN
KEYLLGQETYQIDYEVTGNELCALLLESEYIEQYFPKFNRAQKMPVSTYAIVSYENRKGI
LQLAVAKSKYRASATDKVYTKAKATERLMELCDTYHLCARYCGLQATFGQCSHYRLKGCK
GVCNDEEAVADYNERVHQALAAYYSENETYLIKERGRTEDETAFIYIDKGVYKGFGFVPE
TEQLSHFDEVASYLNLKKSTYHTDVILRSYLRRHKNPSIIPLAISA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgactgagttagcacctacatatcattgtattatagacgttgagactacgggtaaagga
ataaatggtaatcgcattaccgagttttgcgccgtacgtcttaaggatggagaaataata
gacaagtttacatcgcttgtaaatcctgagcaatacattccaccatttattactaatctt
actggtatagatgatgcaatggtagaagatgcacccctctttgaagaaatcgctcagcgc
gttttggaaattacagagggtgccatttttgtagctcacaatgttaactttgactttaat
gtgattaaaggagagtttaaaagacttggggtttcatttgtgcgtaaaaaattgtgcact
gtacgtctttcgcgcaagcttattcctaatttatttagttactccctaggtaatctttgt
gcgtcaatagggattcctcttaataacagacaccgagcagaaggtgatacagatgctact
gttattctatttaaaaggttgctagatctagatgagggcaaaaaggttatgaacgcattt
ttaaatgtacggtctaaagaggctacattacctcctcacctaccttcgcgtattattcaa
gagcttccagaaacggcagggatttatttatttaaagaccgtgctggtaaaatcatttat
gtagggaaagcgattaatatcaagaagcgcgtattatcgcatttttatgataaaaagaat
aaggagtatctcctaggtcaagaaacatatcaaatagattatgaagtaacaggtaatgaa
ctttgcgcactacttctagagtctgaatatatagaacagtattttccaaaatttaataga
gcgcaaaaaatgcctgtgagcacctatgctattgtctcttatgaaaataggaaaggaata
ctacagctcgctgttgcaaagtctaagtatcgtgcaagtgcaacagataaagtttatacg
aaagcaaaagccacagagcgtttaatggaactgtgtgacacgtatcacctatgcgcccgt
tattgtgggttacaagccacttttggtcagtgttcacattaccgtcttaaaggttgtaaa
ggagtgtgtaatgacgaagaagccgtcgcagattataatgagcgagtacatcaagcacta
gcggcttattactcagaaaatgaaacatatcttattaaagaacgtggccgtactgaagat
gaaacggcttttatctacatagataaaggagtttataaaggttttggttttgtgccagag
acagagcagcttagtcattttgatgaagtggcttcatatcttaatcttaagaaaagtacc
taccatacagatgttattttgagaagttacctgcgtagacataaaaacccaagtataatt
cccctagctatttctgcctga
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